Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RJ3 entry

There are 10 chains in PDB entry 8RJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 77	GLY 159
B	ALA 33	LEU 162
C	CYS 25	LEU 162
D	CYS 25	LEU 162
E	CYS 25	LEU 162
F	CYS 25	LEU 162
G	CYS 25	LEU 162
H	THR 32	LEU 162
I	GLY 68	GLY 159
J	TRP 84	LEU 155

There are 30 helices in PDB entry 8RJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	134	155	Right-handed alpha
Helix 2	AA2	A	156	159	Right-handed 310
Helix 3	AA3	B	33	33	Right-handed 310
Helix 4	AA4	B	34	44	Right-handed alpha
Helix 5	AA5	B	69	80	Right-handed alpha
Helix 6	AA6	B	134	156	Right-handed alpha
Helix 7	AA7	B	157	159	Right-handed 310
Helix 8	AA8	C	32	43	Right-handed alpha
Helix 9	AA9	C	67	79	Right-handed alpha
Helix 10	AB1	C	134	154	Right-handed alpha
Helix 11	AB2	D	32	44	Right-handed alpha
Helix 12	AB3	D	69	80	Right-handed alpha
Helix 13	AB4	D	98	102	Right-handed 310
Helix 14	AB5	D	134	156	Right-handed alpha
Helix 15	AB6	D	157	159	Right-handed 310
Helix 16	AB7	E	32	43	Right-handed alpha
Helix 17	AB8	E	69	80	Right-handed alpha
Helix 18	AB9	E	134	157	Right-handed alpha
Helix 19	AC1	F	32	45	Right-handed alpha
Helix 20	AC2	F	67	80	Right-handed alpha
Helix 21	AC3	F	134	157	Right-handed alpha
Helix 22	AC4	G	32	44	Right-handed alpha
Helix 23	AC5	G	69	80	Right-handed alpha
Helix 24	AC6	G	134	156	Right-handed alpha
Helix 25	AC7	H	33	43	Right-handed alpha
Helix 26	AC8	H	69	80	Right-handed alpha
Helix 27	AC9	H	134	157	Right-handed alpha
Helix 28	AD1	I	69	80	Right-handed alpha
Helix 29	AD2	I	134	159	Right-handed alpha
Helix 30	AD3	J	134	155	Right-handed alpha

There are 14 sheets in PDB entry 8RJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	97	first strand
Strand 2	A	103	115	anti-parallel
Strand 3	A	120	132	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	97	first strand
Strand 2	B	103	114	anti-parallel
Strand 3	B	120	132	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	97	first strand
Strand 2	C	104	115	anti-parallel
Strand 3	C	120	128	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	93	first strand
Strand 2	D	107	115	anti-parallel
Strand 3	D	120	126	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	93	first strand
Strand 2	E	105	115	anti-parallel
Strand 3	E	122	129	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	88	first strand
Strand 2	F	103	115	anti-parallel
Strand 3	F	95	98	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	88	first strand
Strand 2	F	103	115	anti-parallel
Strand 3	F	120	129	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	98	first strand
Strand 2	G	103	115	anti-parallel
Strand 3	G	120	121	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	98	first strand
Strand 2	G	103	115	anti-parallel
Strand 3	G	127	129	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	98	first strand
Strand 2	H	103	115	anti-parallel
Strand 3	H	120	122	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	98	first strand
Strand 2	H	103	115	anti-parallel
Strand 3	H	127	130	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	97	first strand
Strand 2	I	104	115	anti-parallel
Strand 3	I	121	122	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	97	first strand
Strand 2	I	104	115	anti-parallel
Strand 3	I	125	126	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	85	98	first strand
Strand 2	J	103	114	anti-parallel
Strand 3	J	127	132	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJ3