Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RJ5 entry

There are 9 chains in PDB entry 8RJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PRO 276
B	MET 0	MET 99
C	ASN 1	PHE 9
D	MET 0	PRO 203
E	GLY 1	ASP 245
F	GLY 1	PRO 276
G	MET 0	MET 99
H	ASN 1	PHE 9
I	MET 0	GLU 15

There are 27 helices in PDB entry 8RJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	55	Right-handed 310
Helix 2	AA2	A	56	85	Right-handed alpha
Helix 3	AA3	A	137	150	Right-handed alpha
Helix 4	AA4	A	151	162	Right-handed alpha
Helix 5	AA5	A	162	175	Right-handed alpha
Helix 6	AA6	A	175	180	Right-handed alpha
Helix 7	AA7	A	253	255	Right-handed 310
Helix 8	AA8	D	79	83	Right-handed 310
Helix 9	AA9	D	165	168	Right-handed 310
Helix 10	AB1	E	85	89	Right-handed 310
Helix 11	AB2	E	117	121	Right-handed 310
Helix 12	AB3	E	132	140	Right-handed alpha
Helix 13	AB4	E	199	204	Right-handed alpha
Helix 14	AB5	F	50	55	Right-handed 310
Helix 15	AB6	F	56	85	Right-handed alpha
Helix 16	AB7	F	137	149	Right-handed alpha
Helix 17	AB8	F	151	162	Right-handed alpha
Helix 18	AB9	F	162	175	Right-handed alpha
Helix 19	AC1	F	175	180	Right-handed alpha
Helix 20	AC2	F	253	255	Right-handed 310
Helix 21	AC3	I	79	83	Right-handed 310
Helix 22	AC4	I	165	168	Right-handed 310
Helix 23	AC5	I	184	189	Right-handed alpha
Helix 24	AC6	J	85	89	Right-handed 310
Helix 25	AC7	J	117	121	Right-handed 310
Helix 26	AC8	J	132	140	Right-handed alpha
Helix 27	AC9	J	199	204	Right-handed alpha

There are 35 sheets in PDB entry 8RJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	199	208	anti-parallel
Strand 3	A	241	246	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	199	208	anti-parallel
Strand 4	A	248	249	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	214	219	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	270	272	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	41	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	91	94	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	60	65	anti-parallel
Strand 5	D	55	57	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	84	93	anti-parallel
Strand 4	D	32	38	anti-parallel
Strand 5	D	44	49	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	106	111	parallel
Strand 3	D	84	93	anti-parallel
Strand 4	D	98	102	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	133	138	anti-parallel
Strand 3	D	173	178	anti-parallel
Strand 4	D	155	156	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	164	first strand
Strand 2	D	169	171	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	10	first strand
Strand 2	E	22	28	anti-parallel
Strand 3	E	78	81	anti-parallel
Strand 4	E	67	70	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	17	first strand
Strand 2	E	110	115	parallel
Strand 3	E	90	97	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	48	52	anti-parallel
Strand 6	E	59	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	17	first strand
Strand 2	E	110	115	parallel
Strand 3	E	90	97	anti-parallel
Strand 4	E	105	106	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	141	151	anti-parallel
Strand 3	E	189	198	anti-parallel
Strand 4	E	178	179	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	167	first strand
Strand 2	E	156	162	anti-parallel
Strand 3	E	208	215	anti-parallel
Strand 4	E	234	241	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	31	37	anti-parallel
Strand 3	F	21	28	anti-parallel
Strand 4	F	3	12	anti-parallel
Strand 5	F	94	103	anti-parallel
Strand 6	F	109	118	anti-parallel
Strand 7	F	122	126	anti-parallel
Strand 8	F	133	135	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	193	first strand
Strand 2	F	199	208	anti-parallel
Strand 3	F	241	249	anti-parallel
Strand 4	F	228	230	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	193	first strand
Strand 2	F	199	208	anti-parallel
Strand 3	F	241	249	anti-parallel
Strand 4	F	234	235	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	223	first strand
Strand 2	F	213	219	anti-parallel
Strand 3	F	257	263	anti-parallel
Strand 4	F	270	273	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	50	51	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	55	56	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	41	first strand
Strand 2	G	78	83	anti-parallel
Strand 3	G	91	94	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	60	65	anti-parallel
Strand 5	I	55	57	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	106	111	parallel
Strand 3	I	85	94	anti-parallel
Strand 4	I	32	38	anti-parallel
Strand 5	I	44	49	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	106	111	parallel
Strand 3	I	85	94	anti-parallel
Strand 4	I	97	102	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	134	138	anti-parallel
Strand 3	I	173	177	anti-parallel
Strand 4	I	155	156	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	162	164	first strand
Strand 2	I	169	171	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	7	10	first strand
Strand 2	J	22	28	anti-parallel
Strand 3	J	78	81	anti-parallel
Strand 4	J	67	70	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	13	17	first strand
Strand 2	J	110	115	parallel
Strand 3	J	90	97	anti-parallel
Strand 4	J	34	40	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	59	60	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	13	17	first strand
Strand 2	J	110	115	parallel
Strand 3	J	90	97	anti-parallel
Strand 4	J	105	106	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	129	first strand
Strand 2	J	141	151	anti-parallel
Strand 3	J	189	198	anti-parallel
Strand 4	J	171	173	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	165	167	first strand
Strand 2	J	156	162	anti-parallel
Strand 3	J	208	215	anti-parallel
Strand 4	J	234	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJ5