Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RJL entry

There are 18 chains in PDB entry 8RJL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 33	LEU 353
B	TYR 33	GLN 352
C	SER 5	ILE 376
D	PRO 9	ALA 377
G	PHE 7	PRO 375
H	SER 5	PRO 375
E	TYR 33	LEU 353
I	TYR 33	GLN 352
K	SER 5	ILE 376
M	PRO 9	ALA 377
O	PHE 7	PRO 375
Q	SER 5	PRO 375
F	TYR 33	LEU 353
J	TYR 33	GLN 352
L	SER 5	ILE 376
N	PRO 9	ALA 377
P	PHE 7	PRO 375
R	SER 5	PRO 375

There are244 helices in PDB entry 8RJL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	57	Right-handed alpha
Helix 2	AA2	A	61	72	Right-handed alpha
Helix 3	AA3	A	82	87	Right-handed alpha
Helix 4	AA4	A	94	110	Right-handed alpha
Helix 5	AA5	A	120	126	Right-handed alpha
Helix 6	AA6	A	131	145	Right-handed alpha
Helix 7	AA7	A	156	167	Right-handed alpha
Helix 8	AA8	A	173	185	Right-handed alpha
Helix 9	AA9	A	191	201	Right-handed alpha
Helix 10	AB1	A	202	204	Right-handed 310
Helix 11	AB2	A	206	219	Right-handed alpha
Helix 12	AB3	A	314	327	Right-handed alpha
Helix 13	AB4	A	329	333	Right-handed 310
Helix 14	AB5	A	334	351	Right-handed alpha
Helix 15	AB6	B	37	44	Right-handed alpha
Helix 16	AB7	B	48	56	Right-handed alpha
Helix 17	AB8	B	64	75	Right-handed alpha
Helix 18	AB9	B	80	86	Right-handed alpha
Helix 19	AC1	B	87	89	Right-handed 310
Helix 20	AC2	B	94	110	Right-handed alpha
Helix 21	AC3	B	120	123	Right-handed 310
Helix 22	AC4	B	124	139	Right-handed alpha
Helix 23	AC5	B	140	142	Right-handed 310
Helix 24	AC6	B	157	167	Right-handed alpha
Helix 25	AC7	B	171	185	Right-handed alpha
Helix 26	AC8	B	192	202	Right-handed alpha
Helix 27	AC9	B	206	219	Right-handed alpha
Helix 28	AD1	B	314	327	Right-handed alpha
Helix 29	AD2	B	332	352	Right-handed alpha
Helix 30	AD3	C	38	43	Right-handed alpha
Helix 31	AD4	C	46	57	Right-handed alpha
Helix 32	AD5	C	61	72	Right-handed alpha
Helix 33	AD6	C	79	88	Right-handed alpha
Helix 34	AD7	C	94	104	Right-handed alpha
Helix 35	AD8	C	122	131	Right-handed alpha
Helix 36	AD9	C	132	144	Right-handed alpha
Helix 37	AE1	C	156	167	Right-handed alpha
Helix 38	AE2	C	171	185	Right-handed alpha
Helix 39	AE3	C	191	202	Right-handed alpha
Helix 40	AE4	C	206	219	Right-handed alpha
Helix 41	AE5	C	315	327	Right-handed alpha
Helix 42	AE6	C	332	352	Right-handed alpha
Helix 43	AE7	D	37	42	Right-handed alpha
Helix 44	AE8	D	46	57	Right-handed alpha
Helix 45	AE9	D	61	75	Right-handed alpha
Helix 46	AF1	D	79	87	Right-handed alpha
Helix 47	AF2	D	94	106	Right-handed alpha
Helix 48	AF3	D	123	131	Right-handed alpha
Helix 49	AF4	D	131	145	Right-handed alpha
Helix 50	AF5	D	156	167	Right-handed alpha
Helix 51	AF6	D	171	184	Right-handed alpha
Helix 52	AF7	D	191	202	Right-handed alpha
Helix 53	AF8	D	206	215	Right-handed alpha
Helix 54	AF9	D	318	327	Right-handed alpha
Helix 55	AG1	D	332	352	Right-handed alpha
Helix 56	AG2	G	46	57	Right-handed alpha
Helix 57	AG3	G	61	74	Right-handed alpha
Helix 58	AG4	G	82	87	Right-handed alpha
Helix 59	AG5	G	94	104	Right-handed alpha
Helix 60	AG6	G	122	145	Right-handed alpha
Helix 61	AG7	G	156	167	Right-handed alpha
Helix 62	AG8	G	171	184	Right-handed alpha
Helix 63	AG9	G	191	202	Right-handed alpha
Helix 64	AH1	G	206	219	Right-handed alpha
Helix 65	AH2	G	315	326	Right-handed alpha
Helix 66	AH3	G	333	342	Right-handed alpha
Helix 67	AH4	G	343	352	Right-handed alpha
Helix 68	AH5	H	37	44	Right-handed alpha
Helix 69	AH6	H	46	57	Right-handed alpha
Helix 70	AH7	H	61	75	Right-handed alpha
Helix 71	AH8	H	79	87	Right-handed alpha
Helix 72	AH9	H	94	110	Right-handed alpha
Helix 73	AI1	H	119	143	Right-handed alpha
Helix 74	AI2	H	156	167	Right-handed alpha
Helix 75	AI3	H	171	184	Right-handed alpha
Helix 76	AI4	H	191	201	Right-handed alpha
Helix 77	AI5	H	202	204	Right-handed 310
Helix 78	AI6	H	206	219	Right-handed alpha
Helix 79	AI7	H	315	326	Right-handed alpha
Helix 80	AI8	H	332	341	Right-handed alpha
Helix 81	AI9	H	341	352	Right-handed alpha
Helix 82	AJ1	E	48	57	Right-handed alpha
Helix 83	AJ2	E	61	72	Right-handed alpha
Helix 84	AJ3	E	82	87	Right-handed alpha
Helix 85	AJ4	E	94	110	Right-handed alpha
Helix 86	AJ5	E	120	126	Right-handed alpha
Helix 87	AJ6	E	131	145	Right-handed alpha
Helix 88	AJ7	E	156	167	Right-handed alpha
Helix 89	AJ8	E	173	185	Right-handed alpha
Helix 90	AJ9	E	191	201	Right-handed alpha
Helix 91	AK1	E	202	204	Right-handed 310
Helix 92	AK2	E	206	219	Right-handed alpha
Helix 93	AK3	E	314	327	Right-handed alpha
Helix 94	AK4	E	329	333	Right-handed 310
Helix 95	AK5	E	334	351	Right-handed alpha
Helix 96	AK6	I	37	44	Right-handed alpha
Helix 97	AK7	I	48	56	Right-handed alpha
Helix 98	AK8	I	64	75	Right-handed alpha
Helix 99	AK9	I	80	86	Right-handed alpha
Helix 100	AL1	I	87	89	Right-handed 310
Helix 101	AL2	I	94	110	Right-handed alpha
Helix 102	AL3	I	120	123	Right-handed 310
Helix 103	AL4	I	124	139	Right-handed alpha
Helix 104	AL5	I	140	142	Right-handed 310
Helix 105	AL6	I	157	167	Right-handed alpha
Helix 106	AL7	I	171	185	Right-handed alpha
Helix 107	AL8	I	192	202	Right-handed alpha
Helix 108	AL9	I	206	219	Right-handed alpha
Helix 109	AM1	I	314	327	Right-handed alpha
Helix 110	AM2	I	332	352	Right-handed alpha
Helix 111	AM3	K	38	43	Right-handed alpha
Helix 112	AM4	K	46	57	Right-handed alpha
Helix 113	AM5	K	61	72	Right-handed alpha
Helix 114	AM6	K	79	88	Right-handed alpha
Helix 115	AM7	K	94	104	Right-handed alpha
Helix 116	AM8	K	122	131	Right-handed alpha
Helix 117	AM9	K	132	144	Right-handed alpha
Helix 118	AN1	K	156	167	Right-handed alpha
Helix 119	AN2	K	171	185	Right-handed alpha
Helix 120	AN3	K	191	202	Right-handed alpha
Helix 121	AN4	K	206	219	Right-handed alpha
Helix 122	AN5	K	315	327	Right-handed alpha
Helix 123	AN6	K	332	352	Right-handed alpha
Helix 124	AN7	M	37	42	Right-handed alpha
Helix 125	AN8	M	46	57	Right-handed alpha
Helix 126	AN9	M	61	75	Right-handed alpha
Helix 127	AO1	M	79	87	Right-handed alpha
Helix 128	AO2	M	94	106	Right-handed alpha
Helix 129	AO3	M	123	131	Right-handed alpha
Helix 130	AO4	M	131	145	Right-handed alpha
Helix 131	AO5	M	156	167	Right-handed alpha
Helix 132	AO6	M	171	184	Right-handed alpha
Helix 133	AO7	M	191	202	Right-handed alpha
Helix 134	AO8	M	206	215	Right-handed alpha
Helix 135	AO9	M	318	327	Right-handed alpha
Helix 136	AP1	M	332	352	Right-handed alpha
Helix 137	AP2	O	46	57	Right-handed alpha
Helix 138	AP3	O	61	74	Right-handed alpha
Helix 139	AP4	O	82	87	Right-handed alpha
Helix 140	AP5	O	94	104	Right-handed alpha
Helix 141	AP6	O	122	145	Right-handed alpha
Helix 142	AP7	O	156	167	Right-handed alpha
Helix 143	AP8	O	171	184	Right-handed alpha
Helix 144	AP9	O	191	202	Right-handed alpha
Helix 145	AQ1	O	206	219	Right-handed alpha
Helix 146	AQ2	O	315	326	Right-handed alpha
Helix 147	AQ3	O	333	342	Right-handed alpha
Helix 148	AQ4	O	343	352	Right-handed alpha
Helix 149	AQ5	Q	8	12	Right-handed 310
Helix 150	AQ6	Q	37	44	Right-handed alpha
Helix 151	AQ7	Q	46	57	Right-handed alpha
Helix 152	AQ8	Q	61	75	Right-handed alpha
Helix 153	AQ9	Q	79	87	Right-handed alpha
Helix 154	AR1	Q	94	110	Right-handed alpha
Helix 155	AR2	Q	119	143	Right-handed alpha
Helix 156	AR3	Q	156	167	Right-handed alpha
Helix 157	AR4	Q	171	184	Right-handed alpha
Helix 158	AR5	Q	191	201	Right-handed alpha
Helix 159	AR6	Q	202	204	Right-handed 310
Helix 160	AR7	Q	206	219	Right-handed alpha
Helix 161	AR8	Q	315	326	Right-handed alpha
Helix 162	AR9	Q	332	341	Right-handed alpha
Helix 163	AS1	Q	341	352	Right-handed alpha
Helix 164	AS2	F	48	57	Right-handed alpha
Helix 165	AS3	F	61	72	Right-handed alpha
Helix 166	AS4	F	82	87	Right-handed alpha
Helix 167	AS5	F	94	110	Right-handed alpha
Helix 168	AS6	F	120	126	Right-handed alpha
Helix 169	AS7	F	131	145	Right-handed alpha
Helix 170	AS8	F	156	167	Right-handed alpha
Helix 171	AS9	F	173	185	Right-handed alpha
Helix 172	AT1	F	191	201	Right-handed alpha
Helix 173	AT2	F	202	204	Right-handed 310
Helix 174	AT3	F	206	219	Right-handed alpha
Helix 175	AT4	F	314	327	Right-handed alpha
Helix 176	AT5	F	329	333	Right-handed 310
Helix 177	AT6	F	334	351	Right-handed alpha
Helix 178	AT7	J	37	44	Right-handed alpha
Helix 179	AT8	J	48	56	Right-handed alpha
Helix 180	AT9	J	64	75	Right-handed alpha
Helix 181	AU1	J	80	86	Right-handed alpha
Helix 182	AU2	J	87	89	Right-handed 310
Helix 183	AU3	J	94	110	Right-handed alpha
Helix 184	AU4	J	120	123	Right-handed 310
Helix 185	AU5	J	124	139	Right-handed alpha
Helix 186	AU6	J	140	142	Right-handed 310
Helix 187	AU7	J	157	167	Right-handed alpha
Helix 188	AU8	J	171	185	Right-handed alpha
Helix 189	AU9	J	192	202	Right-handed alpha
Helix 190	AV1	J	206	219	Right-handed alpha
Helix 191	AV2	J	314	327	Right-handed alpha
Helix 192	AV3	J	332	352	Right-handed alpha
Helix 193	AV4	L	38	43	Right-handed alpha
Helix 194	AV5	L	46	57	Right-handed alpha
Helix 195	AV6	L	61	72	Right-handed alpha
Helix 196	AV7	L	79	88	Right-handed alpha
Helix 197	AV8	L	94	104	Right-handed alpha
Helix 198	AV9	L	122	131	Right-handed alpha
Helix 199	AW1	L	132	144	Right-handed alpha
Helix 200	AW2	L	156	167	Right-handed alpha
Helix 201	AW3	L	171	185	Right-handed alpha
Helix 202	AW4	L	191	202	Right-handed alpha
Helix 203	AW5	L	206	219	Right-handed alpha
Helix 204	AW6	L	315	327	Right-handed alpha
Helix 205	AW7	L	332	352	Right-handed alpha
Helix 206	AW8	N	37	42	Right-handed alpha
Helix 207	AW9	N	46	57	Right-handed alpha
Helix 208	AX1	N	61	75	Right-handed alpha
Helix 209	AX2	N	79	87	Right-handed alpha
Helix 210	AX3	N	94	106	Right-handed alpha
Helix 211	AX4	N	123	131	Right-handed alpha
Helix 212	AX5	N	131	145	Right-handed alpha
Helix 213	AX6	N	156	167	Right-handed alpha
Helix 214	AX7	N	171	184	Right-handed alpha
Helix 215	AX8	N	191	202	Right-handed alpha
Helix 216	AX9	N	206	215	Right-handed alpha
Helix 217	AY1	N	318	327	Right-handed alpha
Helix 218	AY2	N	332	352	Right-handed alpha
Helix 219	AY3	P	46	57	Right-handed alpha
Helix 220	AY4	P	61	74	Right-handed alpha
Helix 221	AY5	P	82	87	Right-handed alpha
Helix 222	AY6	P	94	104	Right-handed alpha
Helix 223	AY7	P	122	145	Right-handed alpha
Helix 224	AY8	P	156	167	Right-handed alpha
Helix 225	AY9	P	171	184	Right-handed alpha
Helix 226	AZ1	P	191	202	Right-handed alpha
Helix 227	AZ2	P	206	219	Right-handed alpha
Helix 228	AZ3	P	315	326	Right-handed alpha
Helix 229	AZ4	P	333	342	Right-handed alpha
Helix 230	AZ5	P	343	352	Right-handed alpha
Helix 231	AZ6	R	37	44	Right-handed alpha
Helix 232	AZ7	R	46	57	Right-handed alpha
Helix 233	AZ8	R	61	75	Right-handed alpha
Helix 234	AZ9	R	79	87	Right-handed alpha
Helix 235	BA1	R	94	110	Right-handed alpha
Helix 236	BA2	R	119	143	Right-handed alpha
Helix 237	BA3	R	156	167	Right-handed alpha
Helix 238	BA4	R	171	184	Right-handed alpha
Helix 239	BA5	R	191	201	Right-handed alpha
Helix 240	BA6	R	202	204	Right-handed 310
Helix 241	BA7	R	206	219	Right-handed alpha
Helix 242	BA8	R	315	326	Right-handed alpha
Helix 243	BA9	R	332	341	Right-handed alpha
Helix 244	BB1	R	341	352	Right-handed alpha

There are 18 sheets in PDB entry 8RJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	D	362	363	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	25	first strand
Strand 2	C	30	33	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	364	first strand
Strand 2	D	12	18	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	32	33	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	25	first strand
Strand 2	G	30	33	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	24	first strand
Strand 2	H	31	33	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	15	17	first strand
Strand 2	M	362	363	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	25	first strand
Strand 2	K	30	33	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	360	365	first strand
Strand 2	M	12	19	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	22	23	first strand
Strand 2	M	32	33	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	22	25	first strand
Strand 2	O	30	33	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	22	24	first strand
Strand 2	Q	31	33	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	15	17	first strand
Strand 2	N	362	363	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	22	25	first strand
Strand 2	L	30	33	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	360	365	first strand
Strand 2	N	12	19	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	22	23	first strand
Strand 2	N	32	33	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	22	25	first strand
Strand 2	P	30	33	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	22	24	first strand
Strand 2	R	31	33	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RJL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJL