Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RJM entry

There are 2 chains in PDB entry 8RJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7SER 500
B
 TYR 6SER 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8RJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
46 52Right-handed alpha
Helix 3
AA3
A
61 67Right-handed alpha
Helix 4
AA4
A
67 78Right-handed alpha
Helix 5
AA5
A
125 135Right-handed alpha
Helix 6
AA6
A
141 158Right-handed alpha
Helix 7
AA7
A
193 197Right-handed 310
Helix 8
AA8
A
198 208Right-handed alpha
Helix 9
AA9
A
245 256Right-handed alpha
Helix 10
AB1
A
286 331Right-handed alpha
Helix 11
AB2
A
335 344Right-handed alpha
Helix 12
AB3
A
345 350Right-handed 310
Helix 13
AB4
A
372 374Right-handed 310
Helix 14
AB5
A
375 388Right-handed alpha
Helix 15
AB6
A
396 400Right-handed 310
Helix 16
AB7
A
401 408Right-handed 310
Helix 17
AB8
A
433 438Right-handed 310
Helix 18
AB9
A
454 457Right-handed 310
Helix 19
AC1
A
458 470Right-handed alpha
Helix 20
AC2
A
478 499Right-handed alpha
Helix 21
AC3
B
12 16Right-handed 310
Helix 22
AC4
B
46 52Right-handed alpha
Helix 23
AC5
B
61 67Right-handed alpha
Helix 24
AC6
B
67 77Right-handed alpha
Helix 25
AC7
B
124 135Right-handed alpha
Helix 26
AC8
B
141 158Right-handed alpha
Helix 27
AC9
B
193 197Right-handed 310
Helix 28
AD1
B
198 208Right-handed alpha
Helix 29
AD2
B
245 256Right-handed alpha
Helix 30
AD3
B
286 331Right-handed alpha
Helix 31
AD4
B
335 344Right-handed alpha
Helix 32
AD5
B
345 350Right-handed 310
Helix 33
AD6
B
372 374Right-handed 310
Helix 34
AD7
B
375 388Right-handed alpha
Helix 35
AD8
B
396 401Right-handed alpha
Helix 36
AD9
B
402 408Right-handed 310
Helix 37
AE1
B
433 438Right-handed 310
Helix 38
AE2
B
454 457Right-handed 310
Helix 39
AE3
B
458 470Right-handed alpha
Helix 40
AE4
B
478 500Right-handed alpha
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There are 6 sheets in PDB entry 8RJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
221 224anti-parallel
Strand 3
A
40 44anti-parallel
Strand 4
A
29 34anti-parallel
Strand 5
A
111 118anti-parallel
Strand 6
A
100 108anti-parallel
Strand 7
A
88 94anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
173 180anti-parallel
Strand 3
A
161 167anti-parallel
Strand 4
A
270 279anti-parallel
Strand 5
A
259 267anti-parallel
Strand 6
A
210 213anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 368first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
426 431anti-parallel
Strand 4
A
413 418anti-parallel
Strand 5
A
392 394anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
221 224anti-parallel
Strand 3
B
40 44anti-parallel
Strand 4
B
29 34anti-parallel
Strand 5
B
111 118anti-parallel
Strand 6
B
100 108anti-parallel
Strand 7
B
88 94anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
173 180anti-parallel
Strand 3
B
161 167anti-parallel
Strand 4
B
270 279anti-parallel
Strand 5
B
259 267anti-parallel
Strand 6
B
210 213anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 368first strand
Strand 2
B
355 360anti-parallel
Strand 3
B
426 431anti-parallel
Strand 4
B
413 418anti-parallel
Strand 5
B
392 394anti-parallel
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