Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RJW entry

There are 10 chains in PDB entry 8RJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	ILE 166
B	CYS 25	ASN 176
C	CYS 25	LEU 178
D	CYS 25	ARG 204
E	CYS 25	ARG 204
F	PHE 26	ARG 204
G	PHE 26	LEU 167
H	TYR 36	LEU 162
I	GLU 67	LEU 155
J	T 1	T 23

There are 44 helices in PDB entry 8RJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	43	Right-handed alpha
Helix 2	AA2	A	67	80	Right-handed alpha
Helix 3	AA3	A	138	157	Right-handed alpha
Helix 4	AA4	A	159	163	Right-handed 310
Helix 5	AA5	B	32	44	Right-handed alpha
Helix 6	AA6	B	67	79	Right-handed alpha
Helix 7	AA7	B	134	156	Right-handed alpha
Helix 8	AA8	B	157	167	Right-handed 310
Helix 9	AA9	B	168	176	Right-handed alpha
Helix 10	AB1	C	32	44	Right-handed alpha
Helix 11	AB2	C	67	80	Right-handed alpha
Helix 12	AB3	C	134	156	Right-handed alpha
Helix 13	AB4	C	157	167	Right-handed 310
Helix 14	AB5	C	168	176	Right-handed alpha
Helix 15	AB6	D	32	44	Right-handed alpha
Helix 16	AB7	D	67	80	Right-handed alpha
Helix 17	AB8	D	135	156	Right-handed alpha
Helix 18	AB9	D	157	167	Right-handed 310
Helix 19	AC1	D	168	176	Right-handed alpha
Helix 20	AC2	D	197	204	Right-handed alpha
Helix 21	AC3	E	32	45	Right-handed alpha
Helix 22	AC4	E	48	52	Right-handed 310
Helix 23	AC5	E	67	80	Right-handed alpha
Helix 24	AC6	E	134	156	Right-handed alpha
Helix 25	AC7	E	157	159	Right-handed 310
Helix 26	AC8	E	163	167	Right-handed 310
Helix 27	AC9	E	168	176	Right-handed alpha
Helix 28	AD1	E	197	204	Right-handed alpha
Helix 29	AD2	F	32	44	Right-handed alpha
Helix 30	AD3	F	67	80	Right-handed alpha
Helix 31	AD4	F	134	157	Right-handed alpha
Helix 32	AD5	F	158	163	Right-handed 310
Helix 33	AD6	F	168	176	Right-handed alpha
Helix 34	AD7	F	197	204	Right-handed alpha
Helix 35	AD8	G	32	45	Right-handed alpha
Helix 36	AD9	G	67	80	Right-handed alpha
Helix 37	AE1	G	134	156	Right-handed alpha
Helix 38	AE2	G	157	163	Right-handed 310
Helix 39	AE3	H	38	43	Right-handed alpha
Helix 40	AE4	H	67	79	Right-handed alpha
Helix 41	AE5	H	134	156	Right-handed alpha
Helix 42	AE6	H	157	159	Right-handed 310
Helix 43	AE7	I	68	76	Right-handed alpha
Helix 44	AE8	I	135	155	Right-handed alpha

There are 14 sheets in PDB entry 8RJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	93	first strand
Strand 2	A	104	115	anti-parallel
Strand 3	A	120	124	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	93	first strand
Strand 2	A	104	115	anti-parallel
Strand 3	A	127	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	63	65	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	99	first strand
Strand 2	B	102	115	anti-parallel
Strand 3	B	120	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	62	65	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	99	first strand
Strand 2	C	102	115	anti-parallel
Strand 3	C	120	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	63	65	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	99	first strand
Strand 2	D	102	115	anti-parallel
Strand 3	D	120	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	63	65	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	99	first strand
Strand 2	E	102	115	anti-parallel
Strand 3	E	120	132	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	63	65	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	99	first strand
Strand 2	F	102	115	anti-parallel
Strand 3	F	120	132	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	99	first strand
Strand 2	G	102	115	anti-parallel
Strand 3	G	120	132	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	99	first strand
Strand 2	H	102	115	anti-parallel
Strand 3	H	120	132	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJW