Analysis of interatomic Contacts of Structural Units in PDB entry:
8RK0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RK0 entry

There are 4 chains in PDB entry 8RK0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 193	GLY 315
D	GLU 384	GLY 710
A	GLU 193	GLY 315
B	GLU 384	GLY 710

There are 15 helices in PDB entry 8RK0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	405	409	Right-handed 310
Helix 2	AA2	D	432	442	Right-handed alpha
Helix 3	AA3	D	451	457	Right-handed alpha
Helix 4	AA4	D	461	465	Right-handed 310
Helix 5	AA5	D	499	503	Right-handed 310
Helix 6	AA6	D	599	604	Right-handed alpha
Helix 7	AA7	D	619	624	Right-handed alpha
Helix 8	AA8	B	405	409	Right-handed 310
Helix 9	AA9	B	432	442	Right-handed alpha
Helix 10	AB1	B	451	457	Right-handed alpha
Helix 11	AB2	B	461	465	Right-handed 310
Helix 12	AB3	B	499	503	Right-handed 310
Helix 13	AB4	B	599	604	Right-handed alpha
Helix 14	AB5	B	619	624	Right-handed alpha
Helix 15	AB6	B	625	630	Right-handed 310

There are 18 sheets in PDB entry 8RK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	201	203	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	215	first strand
Strand 2	C	219	222	anti-parallel
Strand 3	C	246	248	anti-parallel
Strand 4	C	240	242	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	231	first strand
Strand 2	C	236	238	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	413	416	first strand
Strand 2	D	419	422	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	570	571	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	516	first strand
Strand 2	D	504	510	anti-parallel
Strand 3	D	552	556	anti-parallel
Strand 4	D	562	566	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	613	615	first strand
Strand 2	D	645	650	anti-parallel
Strand 3	D	631	636	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	664	665	first strand
Strand 2	D	684	685	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	677	679	first strand
Strand 2	D	705	707	anti-parallel
Strand 3	D	697	698	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	201	203	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	215	first strand
Strand 2	A	219	222	anti-parallel
Strand 3	A	246	248	anti-parallel
Strand 4	A	240	241	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	A	236	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	413	416	first strand
Strand 2	B	419	422	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	570	571	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	517	first strand
Strand 2	B	504	510	anti-parallel
Strand 3	B	552	556	anti-parallel
Strand 4	B	562	566	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	615	first strand
Strand 2	B	645	650	anti-parallel
Strand 3	B	631	636	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	665	first strand
Strand 2	B	684	685	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	677	679	first strand
Strand 2	B	705	707	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RK0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RK0