Analysis of interatomic Contacts of Structural Units in PDB entry:
8RK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RK2 entry

There are 3 chains in PDB entry 8RK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 441MET 616
B
 ILE 51SER 174
C
 MET 1PRO 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 8RK2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
444 451Right-handed alpha
Helix 2
AA2
A
532 541Right-handed alpha
Helix 3
AA3
A
543 552Right-handed alpha
Helix 4
AA4
A
554 566Right-handed alpha
Helix 5
AA5
A
598 616Right-handed alpha
Helix 6
AA6
B
152 174Right-handed alpha
Helix 7
AA7
C
3 7Right-handed 310
Helix 8
AA8
C
13 20Right-handed 310
Helix 9
AA9
C
95 107Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8RK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 471first strand
Strand 2
A
516 521anti-parallel
Strand 3
A
526 531anti-parallel
Strand 4
A
584 595parallel
Strand 5
A
569 581anti-parallel
Strand 6
A
460 471anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 492first strand
Strand 2
A
498 500anti-parallel
Strand 3
A
505 507anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
63 66anti-parallel
Strand 3
B
69 70anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 85first strand
Strand 2
B
89 95anti-parallel
Strand 3
B
102 107anti-parallel
Strand 4
B
138 148parallel
Strand 5
B
125 135anti-parallel
Strand 6
B
73 85anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
24 34parallel
Strand 3
C
66 73anti-parallel
Strand 4
C
79 86anti-parallel
Strand 5
C
50 54parallel
Strand 6
C
40 44anti-parallel
Strand 7
C
24 34anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il