Analysis of interatomic Contacts of Structural Units in PDB entry:
8RKC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RKC entry

There are 14 chains in PDB entry 8RKC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 53	GLY 108
H	GLU 53	GLY 108
I	GLU 53	GLY 108
L	GLU 53	GLY 108
M	GLU 53	GLY 108
K	GLU 53	GLY 108
A	ALA 2	ASN 304
N	ALA 2	ASN 304
C	ALA 2	ASN 304
D	ALA 2	ASN 304
E	ALA 2	ASN 304
F	ALA 2	ASN 304
G	ALA 2	ASN 304
J	GLU 53	GLY 108

There are 63 helices in PDB entry 8RKC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	86	94	Right-handed alpha
Helix 2	AA2	H	86	94	Right-handed alpha
Helix 3	AA3	I	86	94	Right-handed alpha
Helix 4	AA4	L	86	94	Right-handed alpha
Helix 5	AA5	M	86	94	Right-handed alpha
Helix 6	AA6	K	86	94	Right-handed alpha
Helix 7	AA7	A	7	11	Right-handed 310
Helix 8	AA8	A	88	93	Right-handed alpha
Helix 9	AA9	A	100	125	Right-handed alpha
Helix 10	AB1	A	192	196	Right-handed 310
Helix 11	AB2	A	234	248	Right-handed alpha
Helix 12	AB3	A	251	255	Right-handed 310
Helix 13	AB4	A	267	269	Right-handed 310
Helix 14	AB5	A	270	278	Right-handed alpha
Helix 15	AB6	N	4	8	Right-handed 310
Helix 16	AB7	N	87	93	Right-handed alpha
Helix 17	AB8	N	101	124	Right-handed alpha
Helix 18	AB9	N	192	197	Right-handed alpha
Helix 19	AC1	N	234	249	Right-handed alpha
Helix 20	AC2	N	251	255	Right-handed 310
Helix 21	AC3	N	267	269	Right-handed 310
Helix 22	AC4	N	270	278	Right-handed alpha
Helix 23	AC5	C	7	12	Right-handed 310
Helix 24	AC6	C	30	35	Right-handed alpha
Helix 25	AC7	C	100	124	Right-handed alpha
Helix 26	AC8	C	192	197	Right-handed alpha
Helix 27	AC9	C	238	248	Right-handed alpha
Helix 28	AD1	C	270	278	Right-handed alpha
Helix 29	AD2	D	30	35	Right-handed alpha
Helix 30	AD3	D	88	93	Right-handed alpha
Helix 31	AD4	D	101	124	Right-handed alpha
Helix 32	AD5	D	192	197	Right-handed alpha
Helix 33	AD6	D	239	248	Right-handed alpha
Helix 34	AD7	D	251	255	Right-handed 310
Helix 35	AD8	D	267	269	Right-handed 310
Helix 36	AD9	D	270	278	Right-handed alpha
Helix 37	AE1	E	5	10	Right-handed 310
Helix 38	AE2	E	30	35	Right-handed alpha
Helix 39	AE3	E	88	93	Right-handed alpha
Helix 40	AE4	E	101	124	Right-handed alpha
Helix 41	AE5	E	192	197	Right-handed alpha
Helix 42	AE6	E	238	249	Right-handed alpha
Helix 43	AE7	E	267	269	Right-handed 310
Helix 44	AE8	E	270	278	Right-handed alpha
Helix 45	AE9	F	5	10	Right-handed alpha
Helix 46	AF1	F	30	35	Right-handed alpha
Helix 47	AF2	F	87	94	Right-handed alpha
Helix 48	AF3	F	101	125	Right-handed alpha
Helix 49	AF4	F	192	197	Right-handed alpha
Helix 50	AF5	F	233	238	Right-handed alpha
Helix 51	AF6	F	238	249	Right-handed alpha
Helix 52	AF7	F	267	269	Right-handed 310
Helix 53	AF8	F	270	278	Right-handed alpha
Helix 54	AF9	G	9	14	Right-handed alpha
Helix 55	AG1	G	30	35	Right-handed alpha
Helix 56	AG2	G	88	93	Right-handed alpha
Helix 57	AG3	G	101	124	Right-handed alpha
Helix 58	AG4	G	125	127	Right-handed 310
Helix 59	AG5	G	193	198	Right-handed alpha
Helix 60	AG6	G	238	248	Right-handed alpha
Helix 61	AG7	G	267	269	Right-handed 310
Helix 62	AG8	G	270	278	Right-handed alpha
Helix 63	AG9	J	86	94	Right-handed alpha

There are 33 sheets in PDB entry 8RKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	73	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	68	first strand
Strand 2	H	71	73	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	68	first strand
Strand 2	I	71	73	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	68	first strand
Strand 2	L	71	73	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	66	68	first strand
Strand 2	M	71	73	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	65	67	first strand
Strand 2	K	72	74	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	73	75	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	G	80	87	anti-parallel
Strand 3	A	65	66	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	G	80	87	anti-parallel
Strand 3	G	201	208	anti-parallel
Strand 4	G	184	186	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	83	87	anti-parallel
Strand 4	F	65	66	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	147	148	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	263	266	anti-parallel
Strand 3	A	296	299	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	46	48	first strand
Strand 2	N	72	74	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	221	222	first strand
Strand 2	N	163	166	anti-parallel
Strand 3	N	261	266	anti-parallel
Strand 4	N	296	299	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	176	177	first strand
Strand 2	N	211	212	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	F	16	17	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	F	83	84	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	203	207	anti-parallel
Strand 3	C	183	187	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	263	266	anti-parallel
Strand 3	C	296	299	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	G	44	49	parallel
Strand 3	G	71	74	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	E	16	17	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	87	first strand
Strand 2	D	201	208	anti-parallel
Strand 3	D	183	186	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	263	266	anti-parallel
Strand 3	D	296	299	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	177	first strand
Strand 2	D	211	212	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	87	first strand
Strand 2	E	201	208	anti-parallel
Strand 3	E	183	186	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	165	first strand
Strand 2	E	263	266	anti-parallel
Strand 3	E	296	299	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	177	first strand
Strand 2	E	211	212	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	176	177	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	142	first strand
Strand 2	F	147	148	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	166	first strand
Strand 2	F	261	266	anti-parallel
Strand 3	F	296	299	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	165	first strand
Strand 2	G	263	265	anti-parallel
Strand 3	G	296	298	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	177	first strand
Strand 2	G	211	212	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	66	68	first strand
Strand 2	J	71	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RKC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RKC