Analysis of interatomic Contacts of Structural Units in PDB entry:
8RKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RKF entry

There are 2 chains in PDB entry 8RKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 39HIS 270
B
 PRO 47PRO 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8RKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 46Right-handed alpha
Helix 2
AA2
A
69 71Right-handed 310
Helix 3
AA3
A
198 205Right-handed alpha
Helix 4
AA4
A
264 270Right-handed alpha
Helix 5
AA5
B
68 71Right-handed 310
Helix 6
AA6
B
199 205Right-handed alpha
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There are 8 sheets in PDB entry 8RKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 187first strand
Strand 2
A
235 248anti-parallel
Strand 3
A
228 232anti-parallel
Strand 4
B
90 93anti-parallel
Strand 5
B
98 102anti-parallel
Strand 6
B
59 63anti-parallel
Strand 7
B
52 55anti-parallel
Strand 8
B
251 261parallel
Strand 9
B
235 248anti-parallel
Strand 10
B
184 188anti-parallel
Strand 11
B
197 198anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 187first strand
Strand 2
A
235 248anti-parallel
Strand 3
A
251 261anti-parallel
Strand 4
A
52 55parallel
Strand 5
A
59 63anti-parallel
Strand 6
A
98 102anti-parallel
Strand 7
A
90 93anti-parallel
Strand 8
B
227 232anti-parallel
Strand 9
B
235 248anti-parallel
Strand 10
B
184 188anti-parallel
Strand 11
B
197 198anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
113 122anti-parallel
Strand 3
A
108 110anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
113 122anti-parallel
Strand 3
A
131 139anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
159 165anti-parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
208 211anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
113 122anti-parallel
Strand 3
B
108 110anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
113 122anti-parallel
Strand 3
B
131 139anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
159 165anti-parallel
Strand 3
B
215 221anti-parallel
Strand 4
B
208 211anti-parallel
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