Analysis of interatomic Contacts of Structural Units in PDB entry:
8RKH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RKH entry

There are 2 chains in PDB entry 8RKH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 145HIS 365
B
 GLU 143LEU 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8RKH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
184 188Right-handed 310
Helix 2
AA2
A
193 199Right-handed alpha
Helix 3
AA3
A
292 297Right-handed 310
Helix 4
AA4
A
314 316Right-handed 310
Helix 5
AA5
B
184 188Right-handed 310
Helix 6
AA6
B
193 199Right-handed alpha
Helix 7
AA7
B
292 297Right-handed 310
Helix 8
AA8
B
314 316Right-handed 310
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There are 10 sheets in PDB entry 8RKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
154 160anti-parallel
Strand 3
A
209 215anti-parallel
Strand 4
A
202 206anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
178 182anti-parallel
Strand 3
A
229 241anti-parallel
Strand 4
A
245 255anti-parallel
Strand 5
B
245 258anti-parallel
Strand 6
B
229 242anti-parallel
Strand 7
B
176 182anti-parallel
Strand 8
B
189 192anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
229 241anti-parallel
Strand 3
A
245 255anti-parallel
Strand 4
B
245 258anti-parallel
Strand 5
B
229 242anti-parallel
Strand 6
B
222 226anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
267 272anti-parallel
Strand 3
A
307 312anti-parallel
Strand 4
A
299 302anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
277 283anti-parallel
Strand 3
A
334 340anti-parallel
Strand 4
A
343 349anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
328 330anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 150first strand
Strand 2
B
154 160anti-parallel
Strand 3
B
209 215anti-parallel
Strand 4
B
202 206anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 263first strand
Strand 2
B
267 272anti-parallel
Strand 3
B
307 312anti-parallel
Strand 4
B
299 302anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 290first strand
Strand 2
B
277 283anti-parallel
Strand 3
B
334 340anti-parallel
Strand 4
B
343 349anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 321first strand
Strand 2
B
326 330anti-parallel
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