Analysis of interatomic Contacts of Structural Units in PDB entry:
8RKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RKT entry

There are 6 chains in PDB entry 8RKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 A 11 G 256
2
 G 1 G 34
3
 G 102 C 133
A
 SER 1LEU 635
B
 ALA 3ARG 89
C
 GLU 3LYS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 8RKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
27 40Right-handed alpha
Helix 3
AA3
A
44 52Right-handed alpha
Helix 4
AA4
A
57 67Right-handed alpha
Helix 5
AA5
A
76 115Right-handed alpha
Helix 6
AA6
A
117 126Right-handed alpha
Helix 7
AA7
A
128 144Right-handed alpha
Helix 8
AA8
A
174 185Right-handed alpha
Helix 9
AA9
A
187 200Right-handed alpha
Helix 10
AB1
A
210 232Right-handed alpha
Helix 11
AB2
A
244 257Right-handed alpha
Helix 12
AB3
A
261 274Right-handed alpha
Helix 13
AB4
A
287 289Right-handed 310
Helix 14
AB5
A
318 338Right-handed alpha
Helix 15
AB6
A
343 347Right-handed 310
Helix 16
AB7
A
364 369Right-handed alpha
Helix 17
AB8
A
380 382Right-handed 310
Helix 18
AB9
A
383 406Right-handed alpha
Helix 19
AC1
A
413 429Right-handed alpha
Helix 20
AC2
A
476 482Right-handed alpha
Helix 21
AC3
A
485 508Right-handed alpha
Helix 22
AC4
A
516 538Right-handed alpha
Helix 23
AC5
A
550 567Right-handed alpha
Helix 24
AC6
A
570 577Right-handed alpha
Helix 25
AC7
A
578 588Right-handed alpha
Helix 26
AC8
A
589 604Right-handed alpha
Helix 27
AC9
A
618 633Right-handed alpha
Helix 28
AD1
B
5 17Right-handed alpha
Helix 29
AD2
B
25 47Right-handed alpha
Helix 30
AD3
B
50 73Right-handed alpha
Helix 31
AD4
B
75 87Right-handed alpha
Helix 32
AD5
C
21 33Right-handed alpha
Helix 33
AD6
C
36 45Right-handed alpha
Helix 34
AD7
C
48 55Right-handed alpha
Helix 35
AD8
C
63 74Right-handed alpha
Helix 36
AD9
C
77 83Right-handed alpha
Helix 37
AE1
C
111 116Right-handed 310
Helix 38
AE2
C
142 146Right-handed 310
Helix 39
AE3
C
159 165Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 8RKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
349 357anti-parallel
Strand 3
A
370 378anti-parallel
Strand 4
A
3 11anti-parallel
Strand 5
A
313 316anti-parallel
Strand 6
A
301 305anti-parallel
Strand 7
A
291 295anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 475first strand
Strand 2
A
460 465anti-parallel
Strand 3
A
444 452anti-parallel
Strand 4
A
540 546parallel
Strand 5
A
607 611parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 122first strand
Strand 2
C
127 128anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il