Analysis of interatomic Contacts of Structural Units in PDB entry:
8RKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RKV entry

There are 10 chains in PDB entry 8RKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	A 53	G 67
3	A 36	T 81
4	T 16	C 41
5	A 15	T 40
6	A 32	T 79
7	A 1	T 15
R	LYS 31	SER 542
S	LYS 31	SER 542
T	ASP 196	SER 522
U	ASP 196	LYS 524

There are 72 helices in PDB entry 8RKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	39	53	Right-handed alpha
Helix 2	AA2	R	57	73	Right-handed alpha
Helix 3	AA3	R	75	90	Right-handed alpha
Helix 4	AA4	R	90	95	Right-handed alpha
Helix 5	AA5	R	108	122	Right-handed alpha
Helix 6	AA6	R	130	146	Right-handed alpha
Helix 7	AA7	R	152	170	Right-handed alpha
Helix 8	AA8	R	248	261	Right-handed alpha
Helix 9	AA9	R	294	305	Right-handed alpha
Helix 10	AB1	R	313	316	Right-handed 310
Helix 11	AB2	R	317	331	Right-handed alpha
Helix 12	AB3	R	332	335	Right-handed 310
Helix 13	AB4	R	349	354	Right-handed alpha
Helix 14	AB5	R	357	372	Right-handed alpha
Helix 15	AB6	R	373	376	Right-handed 310
Helix 16	AB7	R	387	392	Right-handed alpha
Helix 17	AB8	R	402	411	Right-handed alpha
Helix 18	AB9	R	419	423	Right-handed 310
Helix 19	AC1	R	435	440	Right-handed 310
Helix 20	AC2	R	483	495	Right-handed alpha
Helix 21	AC3	R	496	498	Right-handed 310
Helix 22	AC4	R	502	509	Right-handed alpha
Helix 23	AC5	R	525	539	Right-handed alpha
Helix 24	AC6	S	39	54	Right-handed alpha
Helix 25	AC7	S	57	65	Right-handed alpha
Helix 26	AC8	S	67	73	Right-handed alpha
Helix 27	AC9	S	75	95	Right-handed alpha
Helix 28	AD1	S	107	123	Right-handed alpha
Helix 29	AD2	S	130	146	Right-handed alpha
Helix 30	AD3	S	152	170	Right-handed alpha
Helix 31	AD4	S	248	261	Right-handed alpha
Helix 32	AD5	S	294	305	Right-handed alpha
Helix 33	AD6	S	313	316	Right-handed 310
Helix 34	AD7	S	317	331	Right-handed alpha
Helix 35	AD8	S	332	335	Right-handed 310
Helix 36	AD9	S	342	346	Right-handed 310
Helix 37	AE1	S	349	354	Right-handed alpha
Helix 38	AE2	S	357	372	Right-handed alpha
Helix 39	AE3	S	385	392	Right-handed alpha
Helix 40	AE4	S	402	407	Right-handed alpha
Helix 41	AE5	S	435	439	Right-handed 310
Helix 42	AE6	S	461	465	Right-handed 310
Helix 43	AE7	S	483	497	Right-handed alpha
Helix 44	AE8	S	502	512	Right-handed alpha
Helix 45	AE9	S	526	535	Right-handed alpha
Helix 46	AF1	S	537	541	Right-handed 310
Helix 47	AF2	T	248	261	Right-handed alpha
Helix 48	AF3	T	266	270	Right-handed 310
Helix 49	AF4	T	295	305	Right-handed alpha
Helix 50	AF5	T	324	330	Right-handed alpha
Helix 51	AF6	T	331	335	Right-handed 310
Helix 52	AF7	T	357	371	Right-handed alpha
Helix 53	AF8	T	385	394	Right-handed alpha
Helix 54	AF9	T	403	407	Right-handed 310
Helix 55	AG1	T	435	440	Right-handed 310
Helix 56	AG2	T	483	501	Right-handed alpha
Helix 57	AG3	T	503	518	Right-handed alpha
Helix 58	AG4	U	248	261	Right-handed alpha
Helix 59	AG5	U	296	305	Right-handed alpha
Helix 60	AG6	U	323	327	Right-handed 310
Helix 61	AG7	U	331	335	Right-handed 310
Helix 62	AG8	U	359	367	Right-handed alpha
Helix 63	AG9	U	367	372	Right-handed alpha
Helix 64	AH1	U	378	382	Right-handed 310
Helix 65	AH2	U	385	393	Right-handed alpha
Helix 66	AH3	U	402	410	Right-handed 310
Helix 67	AH4	U	419	423	Right-handed 310
Helix 68	AH5	U	435	440	Right-handed 310
Helix 69	AH6	U	483	499	Right-handed alpha
Helix 70	AH7	U	500	501	Right-handed 310
Helix 71	AH8	U	502	506	Right-handed 310
Helix 72	AH9	U	507	520	Right-handed alpha

There are 13 sheets in PDB entry 8RKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	33	35	first strand
Strand 2	T	465	475	anti-parallel
Strand 3	T	455	461	anti-parallel
Strand 4	T	443	447	anti-parallel
Strand 5	T	413	417	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	33	35	first strand
Strand 2	T	465	475	anti-parallel
Strand 3	T	429	433	anti-parallel
Strand 4	T	423	426	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	184	186	first strand
Strand 2	R	192	194	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	237	243	first strand
Strand 2	R	225	231	anti-parallel
Strand 3	R	202	208	anti-parallel
Strand 4	R	283	286	parallel
Strand 5	R	307	310	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	213	214	first strand
Strand 2	R	220	221	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	412	417	first strand
Strand 2	R	443	449	anti-parallel
Strand 3	R	452	462	anti-parallel
Strand 4	R	465	474	anti-parallel
Strand 5	R	429	432	anti-parallel
Strand 6	R	424	426	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	33	35	first strand
Strand 2	U	465	474	anti-parallel
Strand 3	U	455	461	anti-parallel
Strand 4	U	443	448	anti-parallel
Strand 5	U	413	417	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	33	35	first strand
Strand 2	U	465	474	anti-parallel
Strand 3	U	429	432	anti-parallel
Strand 4	U	424	426	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	184	186	first strand
Strand 2	S	192	194	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	236	243	first strand
Strand 2	S	225	231	anti-parallel
Strand 3	S	202	208	anti-parallel
Strand 4	S	283	286	parallel
Strand 5	S	307	310	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	411	418	first strand
Strand 2	S	442	449	anti-parallel
Strand 3	S	452	460	anti-parallel
Strand 4	S	467	474	anti-parallel
Strand 5	S	429	433	anti-parallel
Strand 6	S	423	426	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	237	243	first strand
Strand 2	T	225	231	anti-parallel
Strand 3	T	201	208	anti-parallel
Strand 4	T	283	285	parallel
Strand 5	T	307	308	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	237	243	first strand
Strand 2	U	225	231	anti-parallel
Strand 3	U	201	208	anti-parallel
Strand 4	U	283	286	parallel
Strand 5	U	307	310	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RKV