Analysis of interatomic Contacts of Structural Units in PDB entry:
8RL5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RL5 entry

There are 4 chains in PDB entry 8RL5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	GLN 1	SER 124
L	VAL 2	SER 124
A	PRO 12	SER 451
B	PRO 12	SER 451

There are 40 helices in PDB entry 8RL5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	60	66	Right-handed alpha
Helix 2	AA2	L	60	66	Right-handed alpha
Helix 3	AA3	A	13	24	Right-handed alpha
Helix 4	AA4	A	31	44	Right-handed alpha
Helix 5	AA5	A	57	69	Right-handed alpha
Helix 6	AA6	A	79	92	Right-handed alpha
Helix 7	AA7	A	105	118	Right-handed alpha
Helix 8	AA8	A	129	135	Right-handed alpha
Helix 9	AA9	A	138	148	Right-handed alpha
Helix 10	AB1	A	158	163	Right-handed 310
Helix 11	AB2	A	171	182	Right-handed alpha
Helix 12	AB3	A	196	208	Right-handed alpha
Helix 13	AB4	A	237	251	Right-handed alpha
Helix 14	AB5	A	268	283	Right-handed alpha
Helix 15	AB6	A	294	307	Right-handed alpha
Helix 16	AB7	A	339	349	Right-handed alpha
Helix 17	AB8	A	364	385	Right-handed alpha
Helix 18	AB9	A	390	408	Right-handed alpha
Helix 19	AC1	A	411	421	Right-handed alpha
Helix 20	AC2	A	431	436	Right-handed alpha
Helix 21	AC3	A	436	451	Right-handed alpha
Helix 22	AC4	B	13	23	Right-handed alpha
Helix 23	AC5	B	31	44	Right-handed alpha
Helix 24	AC6	B	57	69	Right-handed alpha
Helix 25	AC7	B	79	93	Right-handed alpha
Helix 26	AC8	B	105	118	Right-handed alpha
Helix 27	AC9	B	129	135	Right-handed alpha
Helix 28	AD1	B	137	148	Right-handed alpha
Helix 29	AD2	B	158	162	Right-handed 310
Helix 30	AD3	B	172	182	Right-handed alpha
Helix 31	AD4	B	196	207	Right-handed alpha
Helix 32	AD5	B	237	251	Right-handed alpha
Helix 33	AD6	B	268	283	Right-handed alpha
Helix 34	AD7	B	294	307	Right-handed alpha
Helix 35	AD8	B	339	350	Right-handed alpha
Helix 36	AD9	B	364	385	Right-handed alpha
Helix 37	AE1	B	390	408	Right-handed alpha
Helix 38	AE2	B	411	421	Right-handed alpha
Helix 39	AE3	B	431	436	Right-handed alpha
Helix 40	AE4	B	436	451	Right-handed alpha

There are 10 sheets in PDB entry 8RL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	7	first strand
Strand 2	K	17	23	anti-parallel
Strand 3	K	77	83	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	34	first strand
Strand 2	K	49	52	anti-parallel
Strand 3	K	57	59	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	46	47	first strand
Strand 2	K	36	39	anti-parallel
Strand 3	K	92	95	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	77	82	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	100	102	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	58	first strand
Strand 2	L	43	52	anti-parallel
Strand 3	L	33	40	anti-parallel
Strand 4	L	92	95	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	125	128	parallel
Strand 3	A	73	76	parallel
Strand 4	A	154	156	parallel
Strand 5	A	188	192	parallel
Strand 6	A	48	51	parallel
Strand 7	A	214	217	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	A	360	363	parallel
Strand 3	A	330	333	parallel
Strand 4	A	262	265	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	125	127	parallel
Strand 3	B	72	76	parallel
Strand 4	B	151	156	parallel
Strand 5	B	188	192	parallel
Strand 6	B	47	51	parallel
Strand 7	B	213	217	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	229	first strand
Strand 2	B	357	361	parallel
Strand 3	B	330	333	parallel
Strand 4	B	263	265	parallel
Strand 5	B	313	314	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RL5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RL5