Analysis of interatomic Contacts of Structural Units in PDB entry:
8RLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RLC entry

There are 4 chains in PDB entry 8RLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 11ALA 227
D
 VAL 2VAL 109
C
 GLN 3SER 118
A
 GLY 100GLN 539
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8RLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
56 67Right-handed alpha
Helix 2
AA2
B
87 90Right-handed 310
Helix 3
AA3
B
134 139Right-handed alpha
Helix 4
AA4
D
83 88Right-handed 310
Helix 5
AA5
C
86 90Right-handed 310
Helix 6
AA6
A
101 125Right-handed alpha
Helix 7
AA7
A
125 134Right-handed alpha
Helix 8
AA8
A
136 165Right-handed alpha
Helix 9
AA9
A
166 187Right-handed alpha
Helix 10
AB1
A
193 222Right-handed alpha
Helix 11
AB2
A
224 257Right-handed alpha
Helix 12
AB3
A
258 260Right-handed 310
Helix 13
AB4
A
261 281Right-handed alpha
Helix 14
AB5
A
299 311Right-handed alpha
Helix 15
AB6
A
312 347Right-handed alpha
Helix 16
AB7
A
360 392Right-handed alpha
Helix 17
AB8
A
394 421Right-handed alpha
Helix 18
AB9
A
421 451Right-handed alpha
Helix 19
AC1
A
452 454Right-handed 310
Helix 20
AC2
A
455 471Right-handed alpha
Helix 21
AC3
A
474 490Right-handed alpha
Helix 22
AC4
A
493 506Right-handed alpha
Helix 23
AC5
A
506 525Right-handed alpha
Helix 24
AC6
A
525 539Right-handed alpha
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There are 5 sheets in PDB entry 8RLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
219 227anti-parallel
Strand 5
B
198 208anti-parallel
Strand 6
B
148 155anti-parallel
Strand 7
B
160 170anti-parallel
Strand 8
B
176 187anti-parallel
Strand 9
B
92 99anti-parallel
Strand 10
B
105 115anti-parallel
Strand 11
B
118 128anti-parallel
Strand 12
B
12 22parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
77 81anti-parallel
Strand 4
D
70 72anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
46 51anti-parallel
Strand 3
D
34 39anti-parallel
Strand 4
D
89 95anti-parallel
Strand 5
D
99 101anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
19 24anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 72anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
33 39anti-parallel
Strand 4
C
92 98anti-parallel
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