Analysis of interatomic Contacts of Structural Units in PDB entry:
8RLK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RLK entry

There are 6 chains in PDB entry 8RLK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 30	ARG 414
B	GLU 30	ARG 414
C	GLU 30	ARG 414
D	GLU 30	ARG 414
E	GLU 30	ARG 414
F	GLU 30	ARG 414

There are105 helices in PDB entry 8RLK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	40	Right-handed 310
Helix 2	AA2	A	44	46	Right-handed 310
Helix 3	AA3	A	47	53	Right-handed alpha
Helix 4	AA4	A	54	58	Right-handed 310
Helix 5	AA5	A	91	99	Right-handed alpha
Helix 6	AA6	A	132	147	Right-handed alpha
Helix 7	AA7	A	155	160	Right-handed alpha
Helix 8	AA8	A	161	164	Right-handed 310
Helix 9	AA9	A	172	178	Right-handed alpha
Helix 10	AB1	A	194	206	Right-handed alpha
Helix 11	AB2	A	209	217	Right-handed alpha
Helix 12	AB3	A	231	247	Right-handed alpha
Helix 13	AB4	A	249	258	Right-handed alpha
Helix 14	AB5	A	288	301	Right-handed alpha
Helix 15	AB6	A	314	320	Right-handed alpha
Helix 16	AB7	A	333	337	Right-handed 310
Helix 17	AB8	A	351	355	Right-handed 310
Helix 18	AB9	A	395	413	Right-handed alpha
Helix 19	AC1	B	36	40	Right-handed 310
Helix 20	AC2	B	44	46	Right-handed 310
Helix 21	AC3	B	47	53	Right-handed alpha
Helix 22	AC4	B	54	58	Right-handed 310
Helix 23	AC5	B	91	99	Right-handed alpha
Helix 24	AC6	B	131	147	Right-handed alpha
Helix 25	AC7	B	155	160	Right-handed alpha
Helix 26	AC8	B	161	164	Right-handed 310
Helix 27	AC9	B	172	178	Right-handed alpha
Helix 28	AD1	B	194	206	Right-handed alpha
Helix 29	AD2	B	209	217	Right-handed alpha
Helix 30	AD3	B	231	247	Right-handed alpha
Helix 31	AD4	B	249	258	Right-handed alpha
Helix 32	AD5	B	288	301	Right-handed alpha
Helix 33	AD6	B	314	320	Right-handed alpha
Helix 34	AD7	B	332	337	Right-handed 310
Helix 35	AD8	B	351	355	Right-handed 310
Helix 36	AD9	B	395	413	Right-handed alpha
Helix 37	AE1	C	36	43	Right-handed 310
Helix 38	AE2	C	44	46	Right-handed 310
Helix 39	AE3	C	47	53	Right-handed alpha
Helix 40	AE4	C	54	58	Right-handed 310
Helix 41	AE5	C	91	100	Right-handed alpha
Helix 42	AE6	C	131	147	Right-handed alpha
Helix 43	AE7	C	155	160	Right-handed alpha
Helix 44	AE8	C	161	164	Right-handed 310
Helix 45	AE9	C	172	178	Right-handed alpha
Helix 46	AF1	C	194	206	Right-handed alpha
Helix 47	AF2	C	209	217	Right-handed alpha
Helix 48	AF3	C	231	247	Right-handed alpha
Helix 49	AF4	C	249	258	Right-handed alpha
Helix 50	AF5	C	288	301	Right-handed alpha
Helix 51	AF6	C	314	320	Right-handed alpha
Helix 52	AF7	C	351	355	Right-handed 310
Helix 53	AF8	C	395	414	Right-handed alpha
Helix 54	AF9	D	36	43	Right-handed 310
Helix 55	AG1	D	44	46	Right-handed 310
Helix 56	AG2	D	47	53	Right-handed alpha
Helix 57	AG3	D	54	58	Right-handed 310
Helix 58	AG4	D	91	100	Right-handed alpha
Helix 59	AG5	D	132	147	Right-handed alpha
Helix 60	AG6	D	155	160	Right-handed alpha
Helix 61	AG7	D	161	164	Right-handed 310
Helix 62	AG8	D	172	178	Right-handed alpha
Helix 63	AG9	D	194	205	Right-handed alpha
Helix 64	AH1	D	209	217	Right-handed alpha
Helix 65	AH2	D	231	247	Right-handed alpha
Helix 66	AH3	D	249	258	Right-handed alpha
Helix 67	AH4	D	288	301	Right-handed alpha
Helix 68	AH5	D	314	320	Right-handed alpha
Helix 69	AH6	D	332	337	Right-handed 310
Helix 70	AH7	D	351	355	Right-handed 310
Helix 71	AH8	D	395	414	Right-handed alpha
Helix 72	AH9	E	36	40	Right-handed 310
Helix 73	AI1	E	44	46	Right-handed 310
Helix 74	AI2	E	47	53	Right-handed alpha
Helix 75	AI3	E	54	58	Right-handed 310
Helix 76	AI4	E	91	100	Right-handed alpha
Helix 77	AI5	E	132	147	Right-handed alpha
Helix 78	AI6	E	155	159	Right-handed 310
Helix 79	AI7	E	160	164	Right-handed 310
Helix 80	AI8	E	172	178	Right-handed alpha
Helix 81	AI9	E	194	206	Right-handed alpha
Helix 82	AJ1	E	209	217	Right-handed alpha
Helix 83	AJ2	E	231	247	Right-handed alpha
Helix 84	AJ3	E	249	258	Right-handed alpha
Helix 85	AJ4	E	288	301	Right-handed alpha
Helix 86	AJ5	E	314	320	Right-handed alpha
Helix 87	AJ6	E	351	355	Right-handed 310
Helix 88	AJ7	E	395	414	Right-handed alpha
Helix 89	AJ8	F	36	40	Right-handed 310
Helix 90	AJ9	F	44	46	Right-handed 310
Helix 91	AK1	F	47	53	Right-handed alpha
Helix 92	AK2	F	54	58	Right-handed 310
Helix 93	AK3	F	91	99	Right-handed alpha
Helix 94	AK4	F	131	147	Right-handed alpha
Helix 95	AK5	F	155	160	Right-handed alpha
Helix 96	AK6	F	161	164	Right-handed 310
Helix 97	AK7	F	172	178	Right-handed alpha
Helix 98	AK8	F	194	206	Right-handed alpha
Helix 99	AK9	F	209	217	Right-handed alpha
Helix 100	AL1	F	231	247	Right-handed alpha
Helix 101	AL2	F	249	258	Right-handed alpha
Helix 102	AL3	F	288	301	Right-handed alpha
Helix 103	AL4	F	314	320	Right-handed alpha
Helix 104	AL5	F	351	355	Right-handed 310
Helix 105	AL6	F	395	414	Right-handed alpha

There are 24 sheets in PDB entry 8RLK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	A	285	287	anti-parallel
Strand 4	A	127	128	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	88	90	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	117	first strand
Strand 2	A	101	108	anti-parallel
Strand 3	A	382	388	anti-parallel
Strand 4	A	372	377	anti-parallel
Strand 5	A	364	368	anti-parallel
Strand 6	A	347	348	anti-parallel
Strand 7	A	341	342	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	308	309	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	64	first strand
Strand 2	B	268	271	anti-parallel
Strand 3	B	285	287	anti-parallel
Strand 4	B	127	128	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	88	90	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	117	first strand
Strand 2	B	101	108	anti-parallel
Strand 3	B	382	388	anti-parallel
Strand 4	B	372	377	anti-parallel
Strand 5	B	364	368	anti-parallel
Strand 6	B	347	348	anti-parallel
Strand 7	B	341	342	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	308	309	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	268	271	anti-parallel
Strand 3	C	285	287	anti-parallel
Strand 4	C	127	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	88	90	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	117	first strand
Strand 2	C	101	108	anti-parallel
Strand 3	C	382	388	anti-parallel
Strand 4	C	372	377	anti-parallel
Strand 5	C	364	368	anti-parallel
Strand 6	C	347	348	anti-parallel
Strand 7	C	341	342	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	308	309	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	64	first strand
Strand 2	D	268	271	anti-parallel
Strand 3	D	285	287	anti-parallel
Strand 4	D	127	128	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	88	90	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	117	first strand
Strand 2	D	101	108	anti-parallel
Strand 3	D	382	388	anti-parallel
Strand 4	D	372	377	anti-parallel
Strand 5	D	364	368	anti-parallel
Strand 6	D	347	348	anti-parallel
Strand 7	D	341	342	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	308	309	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	64	first strand
Strand 2	E	268	271	anti-parallel
Strand 3	E	285	287	anti-parallel
Strand 4	E	127	128	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	85	first strand
Strand 2	E	88	90	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	117	first strand
Strand 2	E	101	108	anti-parallel
Strand 3	E	382	388	anti-parallel
Strand 4	E	372	377	anti-parallel
Strand 5	E	364	368	anti-parallel
Strand 6	E	347	348	anti-parallel
Strand 7	E	341	342	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	305	first strand
Strand 2	E	308	309	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	64	first strand
Strand 2	F	268	271	anti-parallel
Strand 3	F	285	287	anti-parallel
Strand 4	F	127	128	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	85	first strand
Strand 2	F	88	90	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	117	first strand
Strand 2	F	101	108	anti-parallel
Strand 3	F	382	388	anti-parallel
Strand 4	F	372	377	anti-parallel
Strand 5	F	363	368	anti-parallel
Strand 6	F	347	348	anti-parallel
Strand 7	F	341	342	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	305	first strand
Strand 2	F	308	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RLK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RLK