Analysis of interatomic Contacts of Structural Units in PDB entry:
8RLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RLY entry

There are 5 chains in PDB entry 8RLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 284
B
 MET 1GLN 279
C
 MET 1THR 280
D
 MET 1ALA 285
E
 MET 1ALA 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8RLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
45 59Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
80 101Right-handed alpha
Helix 5
AA5
A
118 137Right-handed alpha
Helix 6
AA6
A
157 168Right-handed alpha
Helix 7
AA7
A
170 172Right-handed 310
Helix 8
AA8
A
180 186Right-handed alpha
Helix 9
AA9
A
192 207Right-handed alpha
Helix 10
AB1
A
208 210Right-handed 310
Helix 11
AB2
A
241 250Right-handed alpha
Helix 12
AB3
A
251 254Right-handed 310
Helix 13
AB4
A
264 266Right-handed 310
Helix 14
AB5
A
267 278Right-handed alpha
Helix 15
AB6
B
14 24Right-handed alpha
Helix 16
AB7
B
45 59Right-handed alpha
Helix 17
AB8
B
62 66Right-handed 310
Helix 18
AB9
B
80 102Right-handed alpha
Helix 19
AC1
B
118 136Right-handed alpha
Helix 20
AC2
B
157 168Right-handed alpha
Helix 21
AC3
B
170 172Right-handed 310
Helix 22
AC4
B
180 187Right-handed alpha
Helix 23
AC5
B
192 207Right-handed alpha
Helix 24
AC6
B
208 210Right-handed 310
Helix 25
AC7
B
241 249Right-handed alpha
Helix 26
AC8
B
250 254Right-handed 310
Helix 27
AC9
B
264 266Right-handed 310
Helix 28
AD1
B
267 278Right-handed alpha
Helix 29
AD2
C
13 24Right-handed alpha
Helix 30
AD3
C
45 59Right-handed alpha
Helix 31
AD4
C
62 66Right-handed 310
Helix 32
AD5
C
80 102Right-handed alpha
Helix 33
AD6
C
118 137Right-handed alpha
Helix 34
AD7
C
157 168Right-handed alpha
Helix 35
AD8
C
170 172Right-handed 310
Helix 36
AD9
C
180 186Right-handed alpha
Helix 37
AE1
C
192 207Right-handed alpha
Helix 38
AE2
C
208 210Right-handed 310
Helix 39
AE3
C
241 249Right-handed alpha
Helix 40
AE4
C
250 254Right-handed 310
Helix 41
AE5
C
264 266Right-handed 310
Helix 42
AE6
C
267 278Right-handed alpha
Helix 43
AE7
D
13 24Right-handed alpha
Helix 44
AE8
D
45 59Right-handed alpha
Helix 45
AE9
D
62 66Right-handed 310
Helix 46
AF1
D
80 102Right-handed alpha
Helix 47
AF2
D
118 137Right-handed alpha
Helix 48
AF3
D
157 168Right-handed alpha
Helix 49
AF4
D
170 172Right-handed 310
Helix 50
AF5
D
180 186Right-handed alpha
Helix 51
AF6
D
192 207Right-handed alpha
Helix 52
AF7
D
208 210Right-handed 310
Helix 53
AF8
D
241 249Right-handed alpha
Helix 54
AF9
D
250 254Right-handed 310
Helix 55
AG1
D
264 266Right-handed 310
Helix 56
AG2
D
267 279Right-handed alpha
Helix 57
AG3
E
14 24Right-handed alpha
Helix 58
AG4
E
45 59Right-handed alpha
Helix 59
AG5
E
62 66Right-handed 310
Helix 60
AG6
E
80 102Right-handed alpha
Helix 61
AG7
E
118 137Right-handed alpha
Helix 62
AG8
E
157 167Right-handed alpha
Helix 63
AG9
E
170 172Right-handed 310
Helix 64
AH1
E
180 186Right-handed alpha
Helix 65
AH2
E
192 207Right-handed alpha
Helix 66
AH3
E
208 210Right-handed 310
Helix 67
AH4
E
241 249Right-handed alpha
Helix 68
AH5
E
250 254Right-handed 310
Helix 69
AH6
E
264 266Right-handed 310
Helix 70
AH7
E
267 279Right-handed alpha
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There are 11 sheets in PDB entry 8RLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
3 7parallel
Strand 3
A
257 260parallel
Strand 4
A
212 217parallel
Strand 5
A
174 179parallel
Strand 6
A
141 145parallel
Strand 7
A
105 108parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
231 232anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
3 7parallel
Strand 3
B
257 260parallel
Strand 4
B
212 217parallel
Strand 5
B
174 179parallel
Strand 6
B
141 145parallel
Strand 7
B
105 108parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
231 232anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 30first strand
Strand 2
C
3 7parallel
Strand 3
C
257 260parallel
Strand 4
C
212 217parallel
Strand 5
C
174 179parallel
Strand 6
C
141 145parallel
Strand 7
C
105 108parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
153 154anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
219 220first strand
Strand 2
C
231 232anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 30first strand
Strand 2
D
3 7parallel
Strand 3
D
257 260parallel
Strand 4
D
212 217parallel
Strand 5
D
174 179parallel
Strand 6
D
141 145parallel
Strand 7
D
105 108parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
219 220first strand
Strand 2
D
231 232anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 30first strand
Strand 2
E
3 7parallel
Strand 3
E
257 260parallel
Strand 4
E
212 217parallel
Strand 5
E
174 179parallel
Strand 6
E
141 145parallel
Strand 7
E
105 108parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
219 220first strand
Strand 2
E
231 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il