Analysis of interatomic Contacts of Structural Units in PDB entry:
8RM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RM0 entry

There are 3 chains in PDB entry 8RM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 139	SER 884
B	GLU 139	SER 884
C	GLU 139	SER 397

There are 66 helices in PDB entry 8RM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	145	147	Right-handed 310
Helix 2	AA2	A	175	183	Right-handed alpha
Helix 3	AA3	A	185	206	Right-handed alpha
Helix 4	AA4	A	216	219	Right-handed 310
Helix 5	AA5	A	220	233	Right-handed alpha
Helix 6	AA6	A	270	276	Right-handed 310
Helix 7	AA7	A	288	293	Right-handed alpha
Helix 8	AA8	A	332	347	Right-handed alpha
Helix 9	AA9	A	382	390	Right-handed alpha
Helix 10	AB1	A	409	414	Right-handed alpha
Helix 11	AB2	A	415	419	Right-handed 310
Helix 12	AB3	A	468	475	Right-handed alpha
Helix 13	AB4	A	499	511	Right-handed alpha
Helix 14	AB5	A	512	524	Right-handed alpha
Helix 15	AB6	A	534	538	Right-handed 310
Helix 16	AB7	A	595	599	Right-handed 310
Helix 17	AB8	A	619	623	Right-handed alpha
Helix 18	AB9	A	632	650	Right-handed alpha
Helix 19	AC1	A	655	659	Right-handed 310
Helix 20	AC2	A	660	669	Right-handed alpha
Helix 21	AC3	A	671	681	Right-handed alpha
Helix 22	AC4	A	867	876	Right-handed alpha
Helix 23	AC5	B	145	147	Right-handed 310
Helix 24	AC6	B	175	183	Right-handed alpha
Helix 25	AC7	B	185	206	Right-handed alpha
Helix 26	AC8	B	216	219	Right-handed 310
Helix 27	AC9	B	220	233	Right-handed alpha
Helix 28	AD1	B	270	276	Right-handed 310
Helix 29	AD2	B	288	293	Right-handed alpha
Helix 30	AD3	B	332	347	Right-handed alpha
Helix 31	AD4	B	382	390	Right-handed alpha
Helix 32	AD5	B	409	414	Right-handed alpha
Helix 33	AD6	B	415	419	Right-handed 310
Helix 34	AD7	B	468	475	Right-handed alpha
Helix 35	AD8	B	499	511	Right-handed alpha
Helix 36	AD9	B	512	524	Right-handed alpha
Helix 37	AE1	B	534	538	Right-handed 310
Helix 38	AE2	B	595	599	Right-handed 310
Helix 39	AE3	B	619	623	Right-handed alpha
Helix 40	AE4	B	632	650	Right-handed alpha
Helix 41	AE5	B	655	659	Right-handed 310
Helix 42	AE6	B	660	669	Right-handed alpha
Helix 43	AE7	B	671	681	Right-handed alpha
Helix 44	AE8	B	867	876	Right-handed alpha
Helix 45	AE9	C	145	147	Right-handed 310
Helix 46	AF1	C	175	183	Right-handed alpha
Helix 47	AF2	C	185	206	Right-handed alpha
Helix 48	AF3	C	216	219	Right-handed 310
Helix 49	AF4	C	220	233	Right-handed alpha
Helix 50	AF5	C	270	276	Right-handed 310
Helix 51	AF6	C	288	293	Right-handed alpha
Helix 52	AF7	C	332	347	Right-handed alpha
Helix 53	AF8	C	382	390	Right-handed alpha
Helix 54	AF9	C	409	414	Right-handed alpha
Helix 55	AG1	C	415	419	Right-handed 310
Helix 56	AG2	C	468	475	Right-handed alpha
Helix 57	AG3	C	499	511	Right-handed alpha
Helix 58	AG4	C	512	524	Right-handed alpha
Helix 59	AG5	C	534	538	Right-handed 310
Helix 60	AG6	C	595	599	Right-handed 310
Helix 61	AG7	C	619	623	Right-handed alpha
Helix 62	AG8	C	632	650	Right-handed alpha
Helix 63	AG9	C	655	659	Right-handed 310
Helix 64	AH1	C	660	669	Right-handed alpha
Helix 65	AH2	C	671	681	Right-handed alpha
Helix 66	AH3	C	867	876	Right-handed alpha

There are 30 sheets in PDB entry 8RM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	827	830	anti-parallel
Strand 3	A	810	814	anti-parallel
Strand 4	A	800	804	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	719	724	anti-parallel
Strand 3	A	746	750	anti-parallel
Strand 4	A	753	764	anti-parallel
Strand 5	A	768	775	anti-parallel
Strand 6	A	158	166	parallel
Strand 7	A	700	716	anti-parallel
Strand 8	A	168	174	anti-parallel
Strand 9	A	615	618	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	608	610	first strand
Strand 2	A	158	166	parallel
Strand 3	A	700	716	anti-parallel
Strand 4	A	683	693	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	498	first strand
Strand 2	A	235	239	anti-parallel
Strand 3	A	314	318	anti-parallel
Strand 4	A	540	542	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	301	302	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	454	457	anti-parallel
Strand 3	A	443	445	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	352	353	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	396	first strand
Strand 2	A	484	488	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	792	first strand
Strand 2	A	880	882	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	836	837	first strand
Strand 2	A	840	841	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	827	830	anti-parallel
Strand 3	B	810	814	anti-parallel
Strand 4	B	800	804	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	719	724	anti-parallel
Strand 3	B	746	750	anti-parallel
Strand 4	B	753	764	anti-parallel
Strand 5	B	768	775	anti-parallel
Strand 6	B	158	166	parallel
Strand 7	B	700	716	anti-parallel
Strand 8	B	168	174	anti-parallel
Strand 9	B	615	618	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	610	first strand
Strand 2	B	158	166	parallel
Strand 3	B	700	716	anti-parallel
Strand 4	B	683	693	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	498	first strand
Strand 2	B	235	239	anti-parallel
Strand 3	B	314	318	anti-parallel
Strand 4	B	540	542	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	301	302	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	454	457	anti-parallel
Strand 3	B	443	445	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	352	353	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	396	first strand
Strand 2	B	484	488	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	792	first strand
Strand 2	B	880	882	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	836	837	first strand
Strand 2	B	840	841	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	827	830	anti-parallel
Strand 3	C	810	814	anti-parallel
Strand 4	C	800	804	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	719	724	anti-parallel
Strand 3	C	746	750	anti-parallel
Strand 4	C	753	764	anti-parallel
Strand 5	C	768	775	anti-parallel
Strand 6	C	158	166	parallel
Strand 7	C	700	716	anti-parallel
Strand 8	C	168	174	anti-parallel
Strand 9	C	615	618	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	608	610	first strand
Strand 2	C	158	166	parallel
Strand 3	C	700	716	anti-parallel
Strand 4	C	683	693	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	498	first strand
Strand 2	C	235	239	anti-parallel
Strand 3	C	314	318	anti-parallel
Strand 4	C	540	542	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	301	302	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	454	457	anti-parallel
Strand 3	C	443	445	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	352	353	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	396	first strand
Strand 2	C	484	488	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	790	792	first strand
Strand 2	C	880	882	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	836	837	first strand
Strand 2	C	840	841	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RM0