Analysis of interatomic Contacts of Structural Units in PDB entry:
8RM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RM1 entry

There are 6 chains in PDB entry 8RM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 139	ASN 553
D	ASN 573	ARG 902
B	GLU 139	ASN 553
E	ASN 573	ARG 902
C	GLU 139	ASN 553
F	ASN 573	ARG 902

There are 57 helices in PDB entry 8RM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	182	Right-handed alpha
Helix 2	AA2	A	188	205	Right-handed alpha
Helix 3	AA3	A	220	233	Right-handed alpha
Helix 4	AA4	A	271	276	Right-handed 310
Helix 5	AA5	A	304	308	Right-handed 310
Helix 6	AA6	A	332	347	Right-handed alpha
Helix 7	AA7	A	355	358	Right-handed 310
Helix 8	AA8	A	376	381	Right-handed 310
Helix 9	AA9	A	382	390	Right-handed alpha
Helix 10	AB1	A	401	405	Right-handed 310
Helix 11	AB2	A	406	410	Right-handed 310
Helix 12	AB3	A	469	474	Right-handed alpha
Helix 13	AB4	A	499	507	Right-handed alpha
Helix 14	AB5	A	511	524	Right-handed alpha
Helix 15	AB6	D	576	651	Right-handed alpha
Helix 16	AB7	D	663	668	Right-handed alpha
Helix 17	AB8	D	671	681	Right-handed alpha
Helix 18	AB9	D	868	877	Right-handed alpha
Helix 19	AC1	D	889	899	Right-handed alpha
Helix 20	AC2	B	175	182	Right-handed alpha
Helix 21	AC3	B	188	205	Right-handed alpha
Helix 22	AC4	B	220	233	Right-handed alpha
Helix 23	AC5	B	271	276	Right-handed 310
Helix 24	AC6	B	304	308	Right-handed 310
Helix 25	AC7	B	332	347	Right-handed alpha
Helix 26	AC8	B	355	358	Right-handed 310
Helix 27	AC9	B	376	381	Right-handed 310
Helix 28	AD1	B	382	390	Right-handed alpha
Helix 29	AD2	B	401	405	Right-handed 310
Helix 30	AD3	B	406	410	Right-handed 310
Helix 31	AD4	B	469	474	Right-handed alpha
Helix 32	AD5	B	499	507	Right-handed alpha
Helix 33	AD6	B	511	524	Right-handed alpha
Helix 34	AD7	E	576	651	Right-handed alpha
Helix 35	AD8	E	663	668	Right-handed alpha
Helix 36	AD9	E	671	681	Right-handed alpha
Helix 37	AE1	E	868	877	Right-handed alpha
Helix 38	AE2	E	889	899	Right-handed alpha
Helix 39	AE3	C	175	182	Right-handed alpha
Helix 40	AE4	C	188	205	Right-handed alpha
Helix 41	AE5	C	220	233	Right-handed alpha
Helix 42	AE6	C	271	276	Right-handed 310
Helix 43	AE7	C	304	308	Right-handed 310
Helix 44	AE8	C	332	347	Right-handed alpha
Helix 45	AE9	C	355	358	Right-handed 310
Helix 46	AF1	C	376	381	Right-handed 310
Helix 47	AF2	C	382	390	Right-handed alpha
Helix 48	AF3	C	401	405	Right-handed 310
Helix 49	AF4	C	406	410	Right-handed 310
Helix 50	AF5	C	469	474	Right-handed alpha
Helix 51	AF6	C	499	507	Right-handed alpha
Helix 52	AF7	C	511	524	Right-handed alpha
Helix 53	AF8	F	576	651	Right-handed alpha
Helix 54	AF9	F	663	668	Right-handed alpha
Helix 55	AG1	F	671	681	Right-handed alpha
Helix 56	AG2	F	868	877	Right-handed alpha
Helix 57	AG3	F	889	899	Right-handed alpha

There are 30 sheets in PDB entry 8RM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	D	827	831	anti-parallel
Strand 3	D	810	813	anti-parallel
Strand 4	D	801	804	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	152	first strand
Strand 2	D	719	724	anti-parallel
Strand 3	D	746	748	anti-parallel
Strand 4	D	755	764	anti-parallel
Strand 5	D	768	775	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	170	first strand
Strand 2	D	699	712	anti-parallel
Strand 3	A	173	174	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	170	first strand
Strand 2	D	699	712	anti-parallel
Strand 3	D	683	694	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	498	first strand
Strand 2	A	235	239	anti-parallel
Strand 3	A	314	318	anti-parallel
Strand 4	A	539	542	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	301	302	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	352	353	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	397	first strand
Strand 2	A	483	485	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	727	728	first strand
Strand 2	D	736	740	anti-parallel
Strand 3	D	790	794	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	835	837	first strand
Strand 2	D	840	842	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	141	first strand
Strand 2	E	827	831	anti-parallel
Strand 3	E	810	813	anti-parallel
Strand 4	E	801	804	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	E	719	724	anti-parallel
Strand 3	E	746	748	anti-parallel
Strand 4	E	755	764	anti-parallel
Strand 5	E	768	775	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	170	first strand
Strand 2	E	699	712	anti-parallel
Strand 3	B	173	174	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	170	first strand
Strand 2	E	699	712	anti-parallel
Strand 3	E	683	694	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	498	first strand
Strand 2	B	235	239	anti-parallel
Strand 3	B	314	318	anti-parallel
Strand 4	B	539	542	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	301	302	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	352	353	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	483	485	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	727	728	first strand
Strand 2	E	736	740	anti-parallel
Strand 3	E	790	794	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	835	837	first strand
Strand 2	E	840	842	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	F	827	831	anti-parallel
Strand 3	F	810	813	anti-parallel
Strand 4	F	801	804	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	152	first strand
Strand 2	F	719	724	anti-parallel
Strand 3	F	746	748	anti-parallel
Strand 4	F	755	764	anti-parallel
Strand 5	F	768	775	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	170	first strand
Strand 2	F	699	712	anti-parallel
Strand 3	C	173	174	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	170	first strand
Strand 2	F	699	712	anti-parallel
Strand 3	F	683	694	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	498	first strand
Strand 2	C	235	239	anti-parallel
Strand 3	C	314	318	anti-parallel
Strand 4	C	539	542	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	301	302	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	352	353	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	397	first strand
Strand 2	C	483	485	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	727	728	first strand
Strand 2	F	736	740	anti-parallel
Strand 3	F	790	794	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	835	837	first strand
Strand 2	F	840	842	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RM1