Analysis of interatomic Contacts of Structural Units in PDB entry:
8RMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RMD entry

There are 10 chains in PDB entry 8RMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 56HIS 257
A
 ILE 259THR 455
B
 SER 5ASN 85
C
 THR 3HIS 76
D
 TYR 35GLU 158
I
 ASP 69LYS 171
E
 LEU 56HIS 257
E
 ILE 259THR 455
F
 SER 5ASN 85
G
 THR 3GLU 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8RMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 83Right-handed alpha
Helix 2
AA2
A
93 115Right-handed alpha
Helix 3
AA3
A
117 119Right-handed 310
Helix 4
AA4
A
126 142Right-handed alpha
Helix 5
AA5
A
156 169Right-handed alpha
Helix 6
AA6
A
185 192Right-handed alpha
Helix 7
AA7
A
214 225Right-handed alpha
Helix 8
AA8
A
257 259Right-handed 310
Helix 9
AA9
A
287 291Right-handed 310
Helix 10
AB1
A
297 337Right-handed alpha
Helix 11
AB2
A
345 349Right-handed 310
Helix 12
AB3
A
362 370Right-handed alpha
Helix 13
AB4
A
389 395Right-handed alpha
Helix 14
AB5
A
398 403Right-handed alpha
Helix 15
AB6
A
415 437Right-handed alpha
Helix 16
AB7
A
437 445Right-handed alpha
Helix 17
AB8
B
6 21Right-handed alpha
Helix 18
AB9
B
25 43Right-handed alpha
Helix 19
AC1
B
48 76Right-handed alpha
Helix 20
AC2
B
81 85Right-handed 310
Helix 21
AC3
C
4 17Right-handed alpha
Helix 22
AC4
C
36 51Right-handed alpha
Helix 23
AC5
C
56 63Right-handed alpha
Helix 24
AC6
C
65 76Right-handed alpha
Helix 25
AC7
D
36 45Right-handed alpha
Helix 26
AC8
D
95 110Right-handed alpha
Helix 27
AC9
D
113 118Right-handed alpha
Helix 28
AD1
D
121 130Right-handed alpha
Helix 29
AD2
D
132 134Right-handed 310
Helix 30
AD3
D
135 158Right-handed alpha
Helix 31
AD4
I
92 100Right-handed alpha
Helix 32
AD5
I
133 141Right-handed alpha
Helix 33
AD6
I
159 163Right-handed 310
Helix 34
AD7
E
70 83Right-handed alpha
Helix 35
AD8
E
93 115Right-handed alpha
Helix 36
AD9
E
117 119Right-handed 310
Helix 37
AE1
E
126 142Right-handed alpha
Helix 38
AE2
E
156 169Right-handed alpha
Helix 39
AE3
E
185 193Right-handed alpha
Helix 40
AE4
E
214 226Right-handed alpha
Helix 41
AE5
E
243 248Right-handed alpha
Helix 42
AE6
E
257 259Right-handed 310
Helix 43
AE7
E
287 291Right-handed 310
Helix 44
AE8
E
297 335Right-handed alpha
Helix 45
AE9
E
345 349Right-handed 310
Helix 46
AF1
E
362 370Right-handed alpha
Helix 47
AF2
E
379 383Right-handed 310
Helix 48
AF3
E
389 395Right-handed alpha
Helix 49
AF4
E
398 403Right-handed alpha
Helix 50
AF5
E
415 437Right-handed alpha
Helix 51
AF6
E
437 445Right-handed alpha
Helix 52
AF7
F
6 21Right-handed alpha
Helix 53
AF8
F
25 43Right-handed alpha
Helix 54
AF9
F
48 76Right-handed alpha
Helix 55
AG1
G
4 17Right-handed alpha
Helix 56
AG2
G
36 51Right-handed alpha
Helix 57
AG3
G
56 63Right-handed alpha
Helix 58
AG4
G
65 76Right-handed alpha
Helix 59
AG5
H
36 45Right-handed alpha
Helix 60
AG6
H
95 110Right-handed alpha
Helix 61
AG7
H
113 119Right-handed alpha
Helix 62
AG8
H
121 130Right-handed alpha
Helix 63
AG9
H
132 134Right-handed 310
Helix 64
AH1
H
135 158Right-handed alpha
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There are 9 sheets in PDB entry 8RMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
373 374parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
228 232parallel
Strand 5
A
197 201parallel
Strand 6
A
148 152parallel
Strand 7
A
172 176parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
405 409anti-parallel
Strand 4
A
376 377anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 65first strand
Strand 2
D
72 79anti-parallel
Strand 3
D
85 93anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
82 88first strand
Strand 2
I
70 76anti-parallel
Strand 3
I
166 168parallel
Strand 4
I
118 121anti-parallel
Strand 5
I
150 152anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 60first strand
Strand 2
E
373 374parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
121 124first strand
Strand 2
E
266 270anti-parallel
Strand 3
E
251 255anti-parallel
Strand 4
E
228 232parallel
Strand 5
E
197 201parallel
Strand 6
E
148 152parallel
Strand 7
E
172 176parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
340 342first strand
Strand 2
E
353 358anti-parallel
Strand 3
E
405 409anti-parallel
Strand 4
E
376 377anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
59 65first strand
Strand 2
H
72 79anti-parallel
Strand 3
H
85 93anti-parallel
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