Analysis of interatomic Contacts of Structural Units in PDB entry:
8RMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RMJ entry

There is 1 chain in PDB entry 8RMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 40TYR 665
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8RMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 105Right-handed 310
Helix 2
AA2
A
117 128Right-handed alpha
Helix 3
AA3
A
207 211Right-handed 310
Helix 4
AA4
A
281 284Right-handed 310
Helix 5
AA5
A
369 377Right-handed alpha
Helix 6
AA6
A
394 398Right-handed 310
Helix 7
AA7
A
409 413Right-handed 310
Helix 8
AA8
A
414 424Right-handed alpha
Helix 9
AA9
A
433 437Right-handed 310
Helix 10
AB1
A
532 537Right-handed alpha
Helix 11
AB2
A
539 544Right-handed alpha
Helix 12
AB3
A
575 580Right-handed 310
Helix 13
AB4
A
603 607Right-handed 310
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There are 13 sheets in PDB entry 8RMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
525 529anti-parallel
Strand 3
A
516 520anti-parallel
Strand 4
A
507 511anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
85 90anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
111 113anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 146first strand
Strand 2
A
150 156anti-parallel
Strand 3
A
163 167anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
228 231anti-parallel
Strand 4
A
247 248anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
242 244anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 268first strand
Strand 2
A
271 279anti-parallel
Strand 3
A
290 298anti-parallel
Strand 4
A
316 319anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
330 331anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
361 368anti-parallel
Strand 4
A
440 443anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
390 392anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 457first strand
Strand 2
A
462 471anti-parallel
Strand 3
A
475 484anti-parallel
Strand 4
A
487 497anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 552first strand
Strand 2
A
557 560anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 583first strand
Strand 2
A
661 665parallel
Strand 3
A
652 657anti-parallel
Strand 4
A
611 617anti-parallel
Strand 5
A
621 624anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
640 642anti-parallel
Strand 3
A
632 634anti-parallel
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