Analysis of interatomic Contacts of Structural Units in PDB entry:
8RML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RML entry

There are 13 chains in PDB entry 8RML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	PRO 278
L	GLN 1	SER 114
B	LEU 5	PRO 278
C	LYS 19	LEU 306
D	GLU 37	GLY 305
E	SER 35	LEU 306
F	GLU 37	LEU 306
G	GLU 37	GLY 305
H	LEU 38	GLY 305
I	LEU 38	GLY 305
J	PHE 44	ALA 303
K	LEU 5	ILE 255
M	GLN 1	SER 114

There are142 helices in PDB entry 8RML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	15	Right-handed alpha
Helix 2	AA2	A	15	38	Right-handed alpha
Helix 3	AA3	A	48	70	Right-handed alpha
Helix 4	AA4	A	72	82	Right-handed alpha
Helix 5	AA5	A	95	126	Right-handed alpha
Helix 6	AA6	A	126	133	Right-handed alpha
Helix 7	AA7	A	134	137	Right-handed 310
Helix 8	AA8	A	151	160	Right-handed alpha
Helix 9	AA9	A	169	208	Right-handed alpha
Helix 10	AB1	A	214	252	Right-handed alpha
Helix 11	AB2	A	270	275	Right-handed alpha
Helix 12	AB3	L	87	91	Right-handed 310
Helix 13	AB4	B	6	15	Right-handed alpha
Helix 14	AB5	B	15	38	Right-handed alpha
Helix 15	AB6	B	48	70	Right-handed alpha
Helix 16	AB7	B	72	82	Right-handed alpha
Helix 17	AB8	B	95	126	Right-handed alpha
Helix 18	AB9	B	126	133	Right-handed alpha
Helix 19	AC1	B	134	137	Right-handed 310
Helix 20	AC2	B	151	160	Right-handed alpha
Helix 21	AC3	B	169	208	Right-handed alpha
Helix 22	AC4	B	214	252	Right-handed alpha
Helix 23	AC5	B	270	275	Right-handed alpha
Helix 24	AC6	C	20	43	Right-handed alpha
Helix 25	AC7	C	52	76	Right-handed alpha
Helix 26	AC8	C	76	90	Right-handed alpha
Helix 27	AC9	C	95	110	Right-handed alpha
Helix 28	AD1	C	111	125	Right-handed alpha
Helix 29	AD2	C	125	132	Right-handed alpha
Helix 30	AD3	C	137	141	Right-handed 310
Helix 31	AD4	C	152	159	Right-handed alpha
Helix 32	AD5	C	160	163	Right-handed 310
Helix 33	AD6	C	166	168	Right-handed 310
Helix 34	AD7	C	169	210	Right-handed alpha
Helix 35	AD8	C	213	252	Right-handed alpha
Helix 36	AD9	C	257	267	Right-handed alpha
Helix 37	AE1	C	274	281	Right-handed alpha
Helix 38	AE2	C	297	306	Right-handed alpha
Helix 39	AE3	D	38	42	Right-handed alpha
Helix 40	AE4	D	52	76	Right-handed alpha
Helix 41	AE5	D	79	90	Right-handed alpha
Helix 42	AE6	D	95	111	Right-handed alpha
Helix 43	AE7	D	111	125	Right-handed alpha
Helix 44	AE8	D	125	133	Right-handed alpha
Helix 45	AE9	D	134	136	Right-handed 310
Helix 46	AF1	D	152	159	Right-handed alpha
Helix 47	AF2	D	160	163	Right-handed 310
Helix 48	AF3	D	166	168	Right-handed 310
Helix 49	AF4	D	169	210	Right-handed alpha
Helix 50	AF5	D	213	252	Right-handed alpha
Helix 51	AF6	D	259	267	Right-handed alpha
Helix 52	AF7	D	274	281	Right-handed alpha
Helix 53	AF8	D	297	304	Right-handed alpha
Helix 54	AF9	E	36	43	Right-handed alpha
Helix 55	AG1	E	52	76	Right-handed alpha
Helix 56	AG2	E	77	89	Right-handed alpha
Helix 57	AG3	E	95	109	Right-handed alpha
Helix 58	AG4	E	111	125	Right-handed alpha
Helix 59	AG5	E	125	132	Right-handed alpha
Helix 60	AG6	E	137	141	Right-handed 310
Helix 61	AG7	E	152	159	Right-handed alpha
Helix 62	AG8	E	166	168	Right-handed 310
Helix 63	AG9	E	169	210	Right-handed alpha
Helix 64	AH1	E	213	252	Right-handed alpha
Helix 65	AH2	E	257	267	Right-handed alpha
Helix 66	AH3	E	274	280	Right-handed alpha
Helix 67	AH4	E	297	304	Right-handed alpha
Helix 68	AH5	F	38	42	Right-handed alpha
Helix 69	AH6	F	52	60	Right-handed alpha
Helix 70	AH7	F	61	76	Right-handed alpha
Helix 71	AH8	F	79	90	Right-handed alpha
Helix 72	AH9	F	95	125	Right-handed alpha
Helix 73	AI1	F	125	133	Right-handed alpha
Helix 74	AI2	F	152	159	Right-handed alpha
Helix 75	AI3	F	160	163	Right-handed 310
Helix 76	AI4	F	166	168	Right-handed 310
Helix 77	AI5	F	169	209	Right-handed alpha
Helix 78	AI6	F	213	252	Right-handed alpha
Helix 79	AI7	F	257	267	Right-handed alpha
Helix 80	AI8	F	274	280	Right-handed alpha
Helix 81	AI9	F	297	304	Right-handed alpha
Helix 82	AJ1	G	38	42	Right-handed alpha
Helix 83	AJ2	G	52	76	Right-handed alpha
Helix 84	AJ3	G	79	90	Right-handed alpha
Helix 85	AJ4	G	95	111	Right-handed alpha
Helix 86	AJ5	G	111	125	Right-handed alpha
Helix 87	AJ6	G	125	132	Right-handed alpha
Helix 88	AJ7	G	133	136	Right-handed 310
Helix 89	AJ8	G	152	159	Right-handed alpha
Helix 90	AJ9	G	166	168	Right-handed 310
Helix 91	AK1	G	169	210	Right-handed alpha
Helix 92	AK2	G	213	252	Right-handed alpha
Helix 93	AK3	G	257	267	Right-handed alpha
Helix 94	AK4	G	274	280	Right-handed alpha
Helix 95	AK5	G	297	304	Right-handed alpha
Helix 96	AK6	H	52	76	Right-handed alpha
Helix 97	AK7	H	79	89	Right-handed alpha
Helix 98	AK8	H	95	111	Right-handed alpha
Helix 99	AK9	H	111	125	Right-handed alpha
Helix 100	AL1	H	125	133	Right-handed alpha
Helix 101	AL2	H	134	136	Right-handed 310
Helix 102	AL3	H	152	159	Right-handed alpha
Helix 103	AL4	H	166	168	Right-handed 310
Helix 104	AL5	H	169	210	Right-handed alpha
Helix 105	AL6	H	213	252	Right-handed alpha
Helix 106	AL7	H	257	267	Right-handed alpha
Helix 107	AL8	H	274	280	Right-handed alpha
Helix 108	AL9	H	297	304	Right-handed alpha
Helix 109	AM1	I	52	76	Right-handed alpha
Helix 110	AM2	I	77	90	Right-handed alpha
Helix 111	AM3	I	95	111	Right-handed alpha
Helix 112	AM4	I	111	125	Right-handed alpha
Helix 113	AM5	I	125	132	Right-handed alpha
Helix 114	AM6	I	137	141	Right-handed 310
Helix 115	AM7	I	152	159	Right-handed alpha
Helix 116	AM8	I	166	168	Right-handed 310
Helix 117	AM9	I	169	210	Right-handed alpha
Helix 118	AN1	I	213	252	Right-handed alpha
Helix 119	AN2	I	257	267	Right-handed alpha
Helix 120	AN3	I	274	280	Right-handed alpha
Helix 121	AN4	I	297	304	Right-handed alpha
Helix 122	AN5	J	52	76	Right-handed alpha
Helix 123	AN6	J	77	89	Right-handed alpha
Helix 124	AN7	J	99	110	Right-handed alpha
Helix 125	AN8	J	111	125	Right-handed alpha
Helix 126	AN9	J	125	135	Right-handed alpha
Helix 127	AO1	J	153	160	Right-handed alpha
Helix 128	AO2	J	170	210	Right-handed alpha
Helix 129	AO3	J	213	251	Right-handed alpha
Helix 130	AO4	J	260	267	Right-handed alpha
Helix 131	AO5	J	274	281	Right-handed alpha
Helix 132	AO6	J	297	303	Right-handed alpha
Helix 133	AO7	K	6	15	Right-handed alpha
Helix 134	AO8	K	15	35	Right-handed alpha
Helix 135	AO9	K	48	70	Right-handed alpha
Helix 136	AP1	K	72	82	Right-handed alpha
Helix 137	AP2	K	95	112	Right-handed alpha
Helix 138	AP3	K	112	126	Right-handed alpha
Helix 139	AP4	K	126	131	Right-handed alpha
Helix 140	AP5	K	151	158	Right-handed alpha
Helix 141	AP6	K	170	210	Right-handed alpha
Helix 142	AP7	K	214	252	Right-handed alpha

There are 8 sheets in PDB entry 8RML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	17	24	anti-parallel
Strand 3	L	78	84	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	109	114	parallel
Strand 3	L	92	97	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	51	anti-parallel
Strand 6	L	58	60	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	290	first strand
Strand 2	D	293	295	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	289	290	first strand
Strand 2	G	293	294	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	289	290	first strand
Strand 2	H	293	294	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	289	290	first strand
Strand 2	I	293	294	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	24	anti-parallel
Strand 3	M	78	82	anti-parallel
Strand 4	M	69	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	13	first strand
Strand 2	M	109	114	parallel
Strand 3	M	92	97	anti-parallel
Strand 4	M	35	39	anti-parallel
Strand 5	M	46	51	anti-parallel
Strand 6	M	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RML

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RML