Analysis of interatomic Contacts of Structural Units in PDB entry:
8RMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RMS entry

There are 3 chains in PDB entry 8RMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 716
B	MET 1	GLN 756
C	MET 1	ASN 759

There are 83 helices in PDB entry 8RMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	23	Right-handed alpha
Helix 3	AA3	A	32	49	Right-handed alpha
Helix 4	AA4	A	83	99	Right-handed alpha
Helix 5	AA5	A	126	139	Right-handed alpha
Helix 6	AA6	A	158	160	Right-handed 310
Helix 7	AA7	A	164	185	Right-handed alpha
Helix 8	AA8	A	187	194	Right-handed alpha
Helix 9	AA9	A	209	217	Right-handed alpha
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	240	249	Right-handed alpha
Helix 12	AB3	A	302	313	Right-handed alpha
Helix 13	AB4	A	330	352	Right-handed alpha
Helix 14	AB5	A	363	370	Right-handed alpha
Helix 15	AB6	A	405	415	Right-handed alpha
Helix 16	AB7	A	433	451	Right-handed alpha
Helix 17	AB8	A	453	476	Right-handed alpha
Helix 18	AB9	A	529	538	Right-handed 310
Helix 19	AC1	A	572	580	Right-handed alpha
Helix 20	AC2	A	582	604	Right-handed alpha
Helix 21	AC3	A	608	613	Right-handed alpha
Helix 22	AC4	A	632	650	Right-handed alpha
Helix 23	AC5	A	652	674	Right-handed alpha
Helix 24	AC6	A	682	692	Right-handed alpha
Helix 25	AC7	A	697	716	Right-handed alpha
Helix 26	AC8	B	5	11	Right-handed 310
Helix 27	AC9	B	17	22	Right-handed 310
Helix 28	AD1	B	35	50	Right-handed alpha
Helix 29	AD2	B	84	99	Right-handed alpha
Helix 30	AD3	B	101	117	Right-handed alpha
Helix 31	AD4	B	118	125	Right-handed 310
Helix 32	AD5	B	138	153	Right-handed alpha
Helix 33	AD6	B	156	161	Right-handed 310
Helix 34	AD7	B	162	175	Right-handed alpha
Helix 35	AD8	B	214	222	Right-handed alpha
Helix 36	AD9	B	246	248	Right-handed 310
Helix 37	AE1	B	249	265	Right-handed alpha
Helix 38	AE2	B	274	292	Right-handed alpha
Helix 39	AE3	B	314	326	Right-handed alpha
Helix 40	AE4	B	330	346	Right-handed alpha
Helix 41	AE5	B	371	376	Right-handed 310
Helix 42	AE6	B	382	393	Right-handed alpha
Helix 43	AE7	B	412	426	Right-handed alpha
Helix 44	AE8	B	428	433	Right-handed alpha
Helix 45	AE9	B	455	474	Right-handed alpha
Helix 46	AF1	B	518	536	Right-handed alpha
Helix 47	AF2	B	540	559	Right-handed alpha
Helix 48	AF3	B	572	583	Right-handed alpha
Helix 49	AF4	B	590	594	Right-handed 310
Helix 50	AF5	B	607	612	Right-handed alpha
Helix 51	AF6	B	617	625	Right-handed alpha
Helix 52	AF7	B	636	640	Right-handed 310
Helix 53	AF8	B	687	694	Right-handed alpha
Helix 54	AF9	B	695	700	Right-handed alpha
Helix 55	AG1	B	701	706	Right-handed alpha
Helix 56	AG2	B	713	733	Right-handed alpha
Helix 57	AG3	B	736	756	Right-handed alpha
Helix 58	AG4	C	2	13	Right-handed alpha
Helix 59	AG5	C	13	23	Right-handed alpha
Helix 60	AG6	C	24	31	Right-handed 310
Helix 61	AG7	C	42	52	Right-handed alpha
Helix 62	AG8	C	62	67	Right-handed alpha
Helix 63	AG9	C	92	103	Right-handed alpha
Helix 64	AH1	C	109	115	Right-handed alpha
Helix 65	AH2	C	115	127	Right-handed alpha
Helix 66	AH3	C	155	168	Right-handed alpha
Helix 67	AH4	C	169	172	Right-handed 310
Helix 68	AH5	C	173	178	Right-handed alpha
Helix 69	AH6	C	183	193	Right-handed alpha
Helix 70	AH7	C	199	212	Right-handed alpha
Helix 71	AH8	C	225	229	Right-handed 310
Helix 72	AH9	C	231	236	Right-handed alpha
Helix 73	AI1	C	254	272	Right-handed alpha
Helix 74	AI2	C	275	286	Right-handed alpha
Helix 75	AI3	C	294	301	Right-handed alpha
Helix 76	AI4	C	305	316	Right-handed alpha
Helix 77	AI5	C	390	406	Right-handed alpha
Helix 78	AI6	C	407	412	Right-handed alpha
Helix 79	AI7	C	429	441	Right-handed alpha
Helix 80	AI8	C	442	448	Right-handed alpha
Helix 81	AI9	C	514	518	Right-handed 310
Helix 82	AJ1	C	709	716	Right-handed 310
Helix 83	AJ2	C	747	759	Right-handed alpha

There are 24 sheets in PDB entry 8RMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	52	54	anti-parallel
Strand 3	A	73	74	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	143	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	199	200	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	679	680	anti-parallel
Strand 3	B	477	486	anti-parallel
Strand 4	B	298	306	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	437	442	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	517	526	anti-parallel
Strand 4	A	555	571	anti-parallel
Strand 5	A	541	552	anti-parallel
Strand 6	A	322	324	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	480	490	anti-parallel
Strand 4	A	359	360	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	380	first strand
Strand 2	B	364	369	parallel
Strand 3	B	354	359	anti-parallel
Strand 4	A	391	392	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	631	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	185	first strand
Strand 2	B	206	213	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	223	225	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	492	first strand
Strand 2	B	495	498	anti-parallel
Strand 3	B	501	504	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	643	first strand
Strand 2	B	655	656	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	90	91	anti-parallel
Strand 3	C	78	79	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	146	first strand
Strand 2	C	215	220	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	292	293	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	319	320	first strand
Strand 2	C	493	494	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	325	first strand
Strand 2	C	328	334	anti-parallel
Strand 3	C	361	367	anti-parallel
Strand 4	C	370	377	anti-parallel
Strand 5	C	380	388	anti-parallel
Strand 6	C	478	481	parallel
Strand 7	C	460	463	anti-parallel
Strand 8	C	469	470	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	345	first strand
Strand 2	C	351	359	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	473	475	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	504	506	anti-parallel
Strand 3	C	511	513	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	699	first strand
Strand 2	C	730	736	anti-parallel
Strand 3	C	721	726	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RMS