Analysis of interatomic Contacts of Structural Units in PDB entry:
8RMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RMW entry

There are 2 chains in PDB entry 8RMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 359
B
 MET 1ASP 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8RMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
63 76Right-handed alpha
Helix 4
AA4
A
87 93Right-handed alpha
Helix 5
AA5
A
95 103Right-handed alpha
Helix 6
AA6
A
126 134Right-handed alpha
Helix 7
AA7
A
136 140Right-handed 310
Helix 8
AA8
A
160 179Right-handed alpha
Helix 9
AA9
A
188 196Right-handed alpha
Helix 10
AB1
A
196 204Right-handed alpha
Helix 11
AB2
A
241 252Right-handed alpha
Helix 12
AB3
A
255 259Right-handed 310
Helix 13
AB4
A
264 266Right-handed 310
Helix 14
AB5
A
267 281Right-handed alpha
Helix 15
AB6
A
283 291Right-handed alpha
Helix 16
AB7
A
303 309Right-handed 310
Helix 17
AB8
A
310 316Right-handed alpha
Helix 18
AB9
A
350 359Right-handed alpha
Helix 19
AC1
B
17 29Right-handed alpha
Helix 20
AC2
B
48 52Right-handed 310
Helix 21
AC3
B
63 76Right-handed alpha
Helix 22
AC4
B
87 92Right-handed alpha
Helix 23
AC5
B
95 103Right-handed alpha
Helix 24
AC6
B
126 133Right-handed alpha
Helix 25
AC7
B
136 140Right-handed 310
Helix 26
AC8
B
160 179Right-handed alpha
Helix 27
AC9
B
188 196Right-handed alpha
Helix 28
AD1
B
196 204Right-handed alpha
Helix 29
AD2
B
241 253Right-handed alpha
Helix 30
AD3
B
255 259Right-handed 310
Helix 31
AD4
B
264 266Right-handed 310
Helix 32
AD5
B
267 281Right-handed alpha
Helix 33
AD6
B
283 291Right-handed alpha
Helix 34
AD7
B
303 309Right-handed 310
Helix 35
AD8
B
310 317Right-handed alpha
Helix 36
AD9
B
350 359Right-handed alpha
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There are 6 sheets in PDB entry 8RMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
32 37parallel
Strand 3
A
9 13parallel
Strand 4
A
79 82parallel
Strand 5
A
107 112parallel
Strand 6
A
182 187parallel
Strand 7
B
333 334anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
298 300anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
325 328anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
B
182 187anti-parallel
Strand 3
B
107 112parallel
Strand 4
B
79 82parallel
Strand 5
B
9 13parallel
Strand 6
B
32 37parallel
Strand 7
B
55 58parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 228first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
298 300anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 321first strand
Strand 2
B
326 328anti-parallel
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