Analysis of interatomic Contacts of Structural Units in PDB entry:
8RMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RMY entry

There are 8 chains in PDB entry 8RMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ASP 1	CYS 219
C	ILE 2	GLY 217
A	ALA 2	ASN 463
D	MET 1	LEU 460
E	GLN 1	CYS 221
B	ILE 2	VAL 216
J	VAL 3	PRO 4
K	VAL 3	PRO 4

There are 40 helices in PDB entry 8RMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	85	89	Right-handed 310
Helix 2	AA2	F	126	131	Right-handed alpha
Helix 3	AA3	F	188	194	Right-handed alpha
Helix 4	AA4	C	126	131	Right-handed alpha
Helix 5	AA5	C	188	193	Right-handed alpha
Helix 6	AA6	A	12	20	Right-handed alpha
Helix 7	AA7	A	148	156	Right-handed alpha
Helix 8	AA8	A	184	194	Right-handed alpha
Helix 9	AA9	A	196	209	Right-handed alpha
Helix 10	AB1	A	212	224	Right-handed alpha
Helix 11	AB2	A	246	250	Right-handed 310
Helix 12	AB3	A	253	263	Right-handed alpha
Helix 13	AB4	A	272	288	Right-handed alpha
Helix 14	AB5	A	344	348	Right-handed 310
Helix 15	AB6	A	372	377	Right-handed alpha
Helix 16	AB7	A	385	395	Right-handed alpha
Helix 17	AB8	A	436	441	Right-handed alpha
Helix 18	AB9	A	446	458	Right-handed alpha
Helix 19	AC1	A	459	461	Right-handed 310
Helix 20	AC2	D	12	20	Right-handed alpha
Helix 21	AC3	D	148	156	Right-handed alpha
Helix 22	AC4	D	184	194	Right-handed alpha
Helix 23	AC5	D	196	202	Right-handed alpha
Helix 24	AC6	D	202	209	Right-handed alpha
Helix 25	AC7	D	212	224	Right-handed alpha
Helix 26	AC8	D	246	250	Right-handed 310
Helix 27	AC9	D	253	263	Right-handed alpha
Helix 28	AD1	D	272	288	Right-handed alpha
Helix 29	AD2	D	344	348	Right-handed 310
Helix 30	AD3	D	372	377	Right-handed alpha
Helix 31	AD4	D	385	395	Right-handed alpha
Helix 32	AD5	D	436	441	Right-handed alpha
Helix 33	AD6	D	446	458	Right-handed alpha
Helix 34	AD7	E	63	67	Right-handed 310
Helix 35	AD8	E	88	92	Right-handed 310
Helix 36	AD9	E	132	134	Right-handed 310
Helix 37	AE1	E	161	163	Right-handed 310
Helix 38	AE2	E	191	197	Right-handed alpha
Helix 39	AE3	B	64	69	Right-handed 310
Helix 40	AE4	B	88	92	Right-handed 310

There are 33 sheets in PDB entry 8RMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	76	81	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	107	112	parallel
Strand 3	F	90	96	anti-parallel
Strand 4	F	39	44	anti-parallel
Strand 5	F	51	55	anti-parallel
Strand 6	F	59	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	107	112	parallel
Strand 3	F	90	96	anti-parallel
Strand 4	F	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	123	first strand
Strand 2	F	134	144	anti-parallel
Strand 3	F	178	187	anti-parallel
Strand 4	F	164	168	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	155	first strand
Strand 2	F	196	203	anti-parallel
Strand 3	F	210	215	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	76	81	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	107	112	parallel
Strand 3	C	90	96	anti-parallel
Strand 4	C	39	44	anti-parallel
Strand 5	C	51	55	anti-parallel
Strand 6	C	59	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	107	112	parallel
Strand 3	C	90	96	anti-parallel
Strand 4	C	102	103	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	36	37	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	134	144	anti-parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	164	168	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	155	first strand
Strand 2	C	196	202	anti-parallel
Strand 3	C	210	215	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	38	44	anti-parallel
Strand 3	A	95	101	anti-parallel
Strand 4	A	85	92	anti-parallel
Strand 5	A	71	77	parallel
Strand 6	A	53	59	anti-parallel
Strand 7	A	109	119	anti-parallel
Strand 8	A	122	134	anti-parallel
Strand 9	A	31	33	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	167	first strand
Strand 2	A	170	177	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	235	first strand
Strand 2	A	268	271	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	350	353	anti-parallel
Strand 3	A	326	337	anti-parallel
Strand 4	A	291	301	anti-parallel
Strand 5	A	421	426	anti-parallel
Strand 6	A	433	435	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	313	first strand
Strand 2	A	396	402	parallel
Strand 3	A	409	415	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	38	44	anti-parallel
Strand 3	D	95	101	anti-parallel
Strand 4	D	85	92	anti-parallel
Strand 5	D	71	77	parallel
Strand 6	D	53	60	anti-parallel
Strand 7	D	109	119	anti-parallel
Strand 8	D	122	134	anti-parallel
Strand 9	D	31	33	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	166	first strand
Strand 2	D	171	177	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	235	first strand
Strand 2	D	268	271	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	371	first strand
Strand 2	D	350	353	anti-parallel
Strand 3	D	326	337	anti-parallel
Strand 4	D	291	301	anti-parallel
Strand 5	D	421	426	anti-parallel
Strand 6	D	433	435	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	371	first strand
Strand 2	D	350	353	anti-parallel
Strand 3	D	326	337	anti-parallel
Strand 4	K	4	5	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	313	first strand
Strand 2	D	396	402	parallel
Strand 3	D	409	415	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	79	85	anti-parallel
Strand 4	E	69	74	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	48	54	anti-parallel
Strand 3	E	35	41	anti-parallel
Strand 4	E	93	100	anti-parallel
Strand 5	E	105	108	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	48	54	anti-parallel
Strand 3	E	35	41	anti-parallel
Strand 4	E	93	100	anti-parallel
Strand 5	E	112	114	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	140	150	anti-parallel
Strand 3	E	181	190	anti-parallel
Strand 4	E	168	170	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	137	first strand
Strand 2	E	140	150	anti-parallel
Strand 3	E	181	190	anti-parallel
Strand 4	E	174	175	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	159	first strand
Strand 2	E	199	205	anti-parallel
Strand 3	E	210	216	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	79	85	anti-parallel
Strand 4	B	71	74	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	113	116	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	48	54	anti-parallel
Strand 6	B	59	61	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	113	116	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	105	108	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	144	150	anti-parallel
Strand 3	B	181	186	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	200	205	anti-parallel
Strand 3	B	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RMY