Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RN0 entry

There are 5 chains in PDB entry 8RN0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASN 540	VAL 686
D	MET 1	ARG 716
E	MET 1	LYS 669
F	LYS 41	LEU 744
G	MET 1	ASP 157

There are 94 helices in PDB entry 8RN0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	540	556	Right-handed alpha
Helix 2	AA2	C	556	567	Right-handed alpha
Helix 3	AA3	C	567	573	Right-handed alpha
Helix 4	AA4	C	574	576	Right-handed 310
Helix 5	AA5	C	577	584	Right-handed alpha
Helix 6	AA6	C	588	606	Right-handed alpha
Helix 7	AA7	C	611	619	Right-handed alpha
Helix 8	AA8	C	620	623	Right-handed 310
Helix 9	AA9	D	2	9	Right-handed alpha
Helix 10	AB1	D	10	24	Right-handed alpha
Helix 11	AB2	D	32	49	Right-handed alpha
Helix 12	AB3	D	83	99	Right-handed alpha
Helix 13	AB4	D	126	138	Right-handed alpha
Helix 14	AB5	D	158	160	Right-handed 310
Helix 15	AB6	D	164	186	Right-handed alpha
Helix 16	AB7	D	187	195	Right-handed alpha
Helix 17	AB8	D	209	217	Right-handed alpha
Helix 18	AB9	D	225	235	Right-handed alpha
Helix 19	AC1	D	240	249	Right-handed alpha
Helix 20	AC2	D	302	313	Right-handed alpha
Helix 21	AC3	D	330	350	Right-handed alpha
Helix 22	AC4	D	363	371	Right-handed alpha
Helix 23	AC5	D	372	375	Right-handed 310
Helix 24	AC6	D	380	384	Right-handed 310
Helix 25	AC7	D	405	415	Right-handed alpha
Helix 26	AC8	D	433	451	Right-handed alpha
Helix 27	AC9	D	453	476	Right-handed alpha
Helix 28	AD1	D	533	537	Right-handed 310
Helix 29	AD2	D	572	580	Right-handed alpha
Helix 30	AD3	D	582	604	Right-handed alpha
Helix 31	AD4	D	607	613	Right-handed alpha
Helix 32	AD5	D	632	650	Right-handed alpha
Helix 33	AD6	D	652	674	Right-handed alpha
Helix 34	AD7	D	682	692	Right-handed alpha
Helix 35	AD8	D	697	715	Right-handed alpha
Helix 36	AD9	E	5	11	Right-handed 310
Helix 37	AE1	E	13	22	Right-handed 310
Helix 38	AE2	E	36	50	Right-handed alpha
Helix 39	AE3	E	84	99	Right-handed alpha
Helix 40	AE4	E	101	117	Right-handed alpha
Helix 41	AE5	E	118	123	Right-handed 310
Helix 42	AE6	E	138	153	Right-handed alpha
Helix 43	AE7	E	156	161	Right-handed 310
Helix 44	AE8	E	162	176	Right-handed alpha
Helix 45	AE9	E	213	222	Right-handed alpha
Helix 46	AF1	E	248	266	Right-handed alpha
Helix 47	AF2	E	275	291	Right-handed alpha
Helix 48	AF3	E	314	326	Right-handed alpha
Helix 49	AF4	E	330	345	Right-handed alpha
Helix 50	AF5	E	371	373	Right-handed 310
Helix 51	AF6	E	382	393	Right-handed alpha
Helix 52	AF7	E	394	396	Right-handed 310
Helix 53	AF8	E	412	426	Right-handed alpha
Helix 54	AF9	E	428	433	Right-handed alpha
Helix 55	AG1	E	455	474	Right-handed alpha
Helix 56	AG2	E	518	536	Right-handed alpha
Helix 57	AG3	E	540	560	Right-handed alpha
Helix 58	AG4	E	572	583	Right-handed alpha
Helix 59	AG5	E	585	589	Right-handed 310
Helix 60	AG6	E	590	594	Right-handed 310
Helix 61	AG7	E	607	612	Right-handed alpha
Helix 62	AG8	E	617	625	Right-handed alpha
Helix 63	AG9	F	42	51	Right-handed alpha
Helix 64	AH1	F	60	66	Right-handed 310
Helix 65	AH2	F	92	103	Right-handed alpha
Helix 66	AH3	F	110	115	Right-handed alpha
Helix 67	AH4	F	117	128	Right-handed alpha
Helix 68	AH5	F	231	236	Right-handed alpha
Helix 69	AH6	F	253	271	Right-handed alpha
Helix 70	AH7	F	275	286	Right-handed alpha
Helix 71	AH8	F	294	301	Right-handed alpha
Helix 72	AH9	F	305	316	Right-handed alpha
Helix 73	AI1	F	390	406	Right-handed alpha
Helix 74	AI2	F	407	413	Right-handed alpha
Helix 75	AI3	F	429	441	Right-handed alpha
Helix 76	AI4	F	442	447	Right-handed alpha
Helix 77	AI5	F	514	518	Right-handed 310
Helix 78	AI6	F	541	556	Right-handed alpha
Helix 79	AI7	F	556	567	Right-handed alpha
Helix 80	AI8	F	567	572	Right-handed alpha
Helix 81	AI9	F	573	576	Right-handed 310
Helix 82	AJ1	F	577	584	Right-handed alpha
Helix 83	AJ2	F	585	588	Right-handed 310
Helix 84	AJ3	F	589	607	Right-handed alpha
Helix 85	AJ4	F	611	619	Right-handed alpha
Helix 86	AJ5	F	620	623	Right-handed 310
Helix 87	AJ6	F	711	716	Right-handed 310
Helix 88	AJ7	G	2	12	Right-handed alpha
Helix 89	AJ8	G	29	33	Right-handed 310
Helix 90	AJ9	G	80	87	Right-handed alpha
Helix 91	AK1	G	102	107	Right-handed alpha
Helix 92	AK2	G	108	112	Right-handed 310
Helix 93	AK3	G	124	128	Right-handed 310
Helix 94	AK4	G	130	139	Right-handed alpha

There are 26 sheets in PDB entry 8RN0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	635	639	first strand
Strand 2	C	644	648	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	657	659	first strand
Strand 2	C	664	667	anti-parallel
Strand 3	C	670	674	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	60	63	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	109	111	anti-parallel
Strand 3	D	116	123	anti-parallel
Strand 4	D	144	149	parallel
Strand 5	D	155	156	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	679	680	anti-parallel
Strand 3	E	482	486	anti-parallel
Strand 4	E	298	305	anti-parallel
Strand 5	E	446	453	anti-parallel
Strand 6	E	437	442	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	292	first strand
Strand 2	D	496	506	anti-parallel
Strand 3	D	480	491	anti-parallel
Strand 4	D	359	360	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	324	first strand
Strand 2	D	541	552	anti-parallel
Strand 3	D	555	571	anti-parallel
Strand 4	D	517	526	anti-parallel
Strand 5	D	496	506	anti-parallel
Strand 6	D	480	491	anti-parallel
Strand 7	D	420	421	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	378	first strand
Strand 2	E	364	369	parallel
Strand 3	E	354	359	anti-parallel
Strand 4	D	390	392	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	627	629	first strand
Strand 2	D	622	624	anti-parallel
Strand 3	E	2	3	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	57	first strand
Strand 2	E	64	67	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	135	137	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	183	first strand
Strand 2	E	208	212	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	242	244	first strand
Strand 2	E	223	226	anti-parallel
Strand 3	E	348	350	parallel
Strand 4	E	400	402	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	489	490	first strand
Strand 2	E	495	498	anti-parallel
Strand 3	E	501	504	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	89	91	anti-parallel
Strand 3	F	78	82	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	241	242	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	293	first strand
Strand 2	F	287	289	anti-parallel
Strand 3	F	529	531	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	319	320	first strand
Strand 2	F	493	494	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	323	325	first strand
Strand 2	F	328	335	anti-parallel
Strand 3	F	361	366	anti-parallel
Strand 4	F	370	377	anti-parallel
Strand 5	F	380	388	anti-parallel
Strand 6	F	479	481	parallel
Strand 7	F	460	461	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	345	first strand
Strand 2	F	351	358	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	497	498	first strand
Strand 2	F	504	505	anti-parallel
Strand 3	F	511	513	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	635	639	first strand
Strand 2	F	644	648	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	656	659	first strand
Strand 2	F	664	667	anti-parallel
Strand 3	F	670	673	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	694	699	first strand
Strand 2	F	730	736	anti-parallel
Strand 3	F	721	722	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	694	699	first strand
Strand 2	F	730	736	anti-parallel
Strand 3	F	725	727	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	25	first strand
Strand 2	G	47	50	parallel
Strand 3	G	68	72	parallel
Strand 4	G	92	94	parallel
Strand 5	G	117	119	parallel
Strand 6	G	144	145	parallel
Strand 7	G	148	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RN0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN0