Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RN1 entry

There are 4 chains in PDB entry 8RN1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 715
B	MET 1	LYS 668
V	A 1	A 12
C	ASN 44	LYS 742

There are 85 helices in PDB entry 8RN1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	23	Right-handed alpha
Helix 3	AA3	A	31	48	Right-handed alpha
Helix 4	AA4	A	84	100	Right-handed alpha
Helix 5	AA5	A	128	140	Right-handed alpha
Helix 6	AA6	A	163	184	Right-handed alpha
Helix 7	AA7	A	186	190	Right-handed 310
Helix 8	AA8	A	194	198	Right-handed 310
Helix 9	AA9	A	205	215	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	237	246	Right-handed alpha
Helix 12	AB3	A	266	271	Right-handed 310
Helix 13	AB4	A	301	313	Right-handed alpha
Helix 14	AB5	A	313	318	Right-handed alpha
Helix 15	AB6	A	332	349	Right-handed alpha
Helix 16	AB7	A	359	367	Right-handed alpha
Helix 17	AB8	A	376	383	Right-handed alpha
Helix 18	AB9	A	400	411	Right-handed alpha
Helix 19	AC1	A	429	447	Right-handed alpha
Helix 20	AC2	A	449	472	Right-handed alpha
Helix 21	AC3	A	525	533	Right-handed 310
Helix 22	AC4	A	563	572	Right-handed alpha
Helix 23	AC5	A	574	596	Right-handed alpha
Helix 24	AC6	A	599	605	Right-handed alpha
Helix 25	AC7	A	629	646	Right-handed alpha
Helix 26	AC8	A	648	670	Right-handed alpha
Helix 27	AC9	A	678	688	Right-handed alpha
Helix 28	AD1	A	693	715	Right-handed alpha
Helix 29	AD2	B	7	12	Right-handed alpha
Helix 30	AD3	B	17	22	Right-handed 310
Helix 31	AD4	B	35	49	Right-handed alpha
Helix 32	AD5	B	84	99	Right-handed alpha
Helix 33	AD6	B	101	117	Right-handed alpha
Helix 34	AD7	B	118	125	Right-handed 310
Helix 35	AD8	B	138	153	Right-handed alpha
Helix 36	AD9	B	156	161	Right-handed 310
Helix 37	AE1	B	162	174	Right-handed alpha
Helix 38	AE2	B	214	222	Right-handed alpha
Helix 39	AE3	B	248	265	Right-handed alpha
Helix 40	AE4	B	275	292	Right-handed alpha
Helix 41	AE5	B	308	313	Right-handed alpha
Helix 42	AE6	B	314	326	Right-handed alpha
Helix 43	AE7	B	330	346	Right-handed alpha
Helix 44	AE8	B	377	381	Right-handed 310
Helix 45	AE9	B	382	393	Right-handed alpha
Helix 46	AF1	B	394	396	Right-handed 310
Helix 47	AF2	B	413	426	Right-handed alpha
Helix 48	AF3	B	454	472	Right-handed alpha
Helix 49	AF4	B	518	535	Right-handed alpha
Helix 50	AF5	B	539	559	Right-handed alpha
Helix 51	AF6	B	569	582	Right-handed alpha
Helix 52	AF7	B	589	593	Right-handed 310
Helix 53	AF8	B	606	613	Right-handed alpha
Helix 54	AF9	B	616	624	Right-handed alpha
Helix 55	AG1	B	635	641	Right-handed alpha
Helix 56	AG2	C	45	51	Right-handed alpha
Helix 57	AG3	C	64	70	Right-handed alpha
Helix 58	AG4	C	96	105	Right-handed alpha
Helix 59	AG5	C	112	117	Right-handed alpha
Helix 60	AG6	C	117	129	Right-handed alpha
Helix 61	AG7	C	157	170	Right-handed alpha
Helix 62	AG8	C	179	184	Right-handed alpha
Helix 63	AG9	C	184	195	Right-handed alpha
Helix 64	AH1	C	201	214	Right-handed alpha
Helix 65	AH2	C	227	232	Right-handed alpha
Helix 66	AH3	C	233	238	Right-handed alpha
Helix 67	AH4	C	255	275	Right-handed alpha
Helix 68	AH5	C	277	288	Right-handed alpha
Helix 69	AH6	C	295	303	Right-handed alpha
Helix 70	AH7	C	308	318	Right-handed alpha
Helix 71	AH8	C	392	408	Right-handed alpha
Helix 72	AH9	C	409	414	Right-handed alpha
Helix 73	AI1	C	431	443	Right-handed alpha
Helix 74	AI2	C	444	452	Right-handed alpha
Helix 75	AI3	C	515	519	Right-handed 310
Helix 76	AI4	C	534	541	Right-handed 310
Helix 77	AI5	C	542	557	Right-handed alpha
Helix 78	AI6	C	557	568	Right-handed alpha
Helix 79	AI7	C	570	574	Right-handed 310
Helix 80	AI8	C	575	582	Right-handed alpha
Helix 81	AI9	C	586	607	Right-handed alpha
Helix 82	AJ1	C	611	619	Right-handed alpha
Helix 83	AJ2	C	620	623	Right-handed 310
Helix 84	AJ3	C	682	688	Right-handed alpha
Helix 85	AJ4	C	713	718	Right-handed alpha

There are 25 sheets in PDB entry 8RN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	53	54	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	118	124	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	153	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	442	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	514	522	anti-parallel
Strand 4	A	550	562	anti-parallel
Strand 5	A	537	545	anti-parallel
Strand 6	A	323	326	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	476	486	anti-parallel
Strand 4	A	355	356	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	628	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	184	first strand
Strand 2	B	207	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	504	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	91	93	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	137	first strand
Strand 2	C	242	247	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	219	222	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	531	532	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	326	first strand
Strand 2	C	330	332	anti-parallel
Strand 3	C	368	369	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	337	first strand
Strand 2	C	363	365	anti-parallel
Strand 3	C	374	379	anti-parallel
Strand 4	C	382	388	anti-parallel
Strand 5	C	479	481	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	347	first strand
Strand 2	C	353	360	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	474	476	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	505	506	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	649	651	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	660	662	first strand
Strand 2	C	667	670	anti-parallel
Strand 3	C	673	676	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	702	first strand
Strand 2	C	734	740	anti-parallel
Strand 3	C	725	731	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RN1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN1