Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RN2 entry

There are 3 chains in PDB entry 8RN2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 716
B	MET 1	LYS 668
C	ASN 44	ARG 741

There are 81 helices in PDB entry 8RN2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	25	Right-handed alpha
Helix 3	AA3	A	27	30	Right-handed 310
Helix 4	AA4	A	31	52	Right-handed alpha
Helix 5	AA5	A	84	99	Right-handed alpha
Helix 6	AA6	A	130	140	Right-handed alpha
Helix 7	AA7	A	163	184	Right-handed alpha
Helix 8	AA8	A	192	198	Right-handed alpha
Helix 9	AA9	A	205	214	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	237	245	Right-handed alpha
Helix 12	AB3	A	266	271	Right-handed 310
Helix 13	AB4	A	301	313	Right-handed alpha
Helix 14	AB5	A	313	318	Right-handed alpha
Helix 15	AB6	A	332	348	Right-handed alpha
Helix 16	AB7	A	358	366	Right-handed alpha
Helix 17	AB8	A	376	383	Right-handed alpha
Helix 18	AB9	A	400	411	Right-handed alpha
Helix 19	AC1	A	429	447	Right-handed alpha
Helix 20	AC2	A	449	472	Right-handed alpha
Helix 21	AC3	A	529	533	Right-handed 310
Helix 22	AC4	A	563	573	Right-handed alpha
Helix 23	AC5	A	575	595	Right-handed alpha
Helix 24	AC6	A	599	605	Right-handed alpha
Helix 25	AC7	A	629	646	Right-handed alpha
Helix 26	AC8	A	648	671	Right-handed alpha
Helix 27	AC9	A	678	688	Right-handed alpha
Helix 28	AD1	A	693	716	Right-handed alpha
Helix 29	AD2	B	7	12	Right-handed alpha
Helix 30	AD3	B	13	18	Right-handed alpha
Helix 31	AD4	B	35	49	Right-handed alpha
Helix 32	AD5	B	84	99	Right-handed alpha
Helix 33	AD6	B	101	117	Right-handed alpha
Helix 34	AD7	B	118	122	Right-handed 310
Helix 35	AD8	B	138	153	Right-handed alpha
Helix 36	AD9	B	162	174	Right-handed alpha
Helix 37	AE1	B	214	222	Right-handed alpha
Helix 38	AE2	B	245	265	Right-handed alpha
Helix 39	AE3	B	276	292	Right-handed alpha
Helix 40	AE4	B	308	313	Right-handed alpha
Helix 41	AE5	B	314	326	Right-handed alpha
Helix 42	AE6	B	330	338	Right-handed alpha
Helix 43	AE7	B	338	346	Right-handed alpha
Helix 44	AE8	B	369	373	Right-handed 310
Helix 45	AE9	B	382	393	Right-handed alpha
Helix 46	AF1	B	394	396	Right-handed 310
Helix 47	AF2	B	413	427	Right-handed alpha
Helix 48	AF3	B	454	473	Right-handed alpha
Helix 49	AF4	B	517	535	Right-handed alpha
Helix 50	AF5	B	539	559	Right-handed alpha
Helix 51	AF6	B	569	582	Right-handed alpha
Helix 52	AF7	B	589	593	Right-handed 310
Helix 53	AF8	B	606	612	Right-handed alpha
Helix 54	AF9	B	616	624	Right-handed alpha
Helix 55	AG1	C	45	55	Right-handed alpha
Helix 56	AG2	C	64	69	Right-handed alpha
Helix 57	AG3	C	94	105	Right-handed alpha
Helix 58	AG4	C	112	117	Right-handed alpha
Helix 59	AG5	C	117	130	Right-handed alpha
Helix 60	AG6	C	228	233	Right-handed alpha
Helix 61	AG7	C	233	238	Right-handed alpha
Helix 62	AG8	C	255	274	Right-handed alpha
Helix 63	AG9	C	277	287	Right-handed alpha
Helix 64	AH1	C	296	303	Right-handed alpha
Helix 65	AH2	C	307	318	Right-handed alpha
Helix 66	AH3	C	392	408	Right-handed alpha
Helix 67	AH4	C	409	414	Right-handed alpha
Helix 68	AH5	C	431	443	Right-handed alpha
Helix 69	AH6	C	444	450	Right-handed alpha
Helix 70	AH7	C	515	519	Right-handed 310
Helix 71	AH8	C	534	541	Right-handed 310
Helix 72	AH9	C	544	557	Right-handed alpha
Helix 73	AI1	C	557	566	Right-handed alpha
Helix 74	AI2	C	570	574	Right-handed 310
Helix 75	AI3	C	575	583	Right-handed alpha
Helix 76	AI4	C	586	606	Right-handed alpha
Helix 77	AI5	C	611	619	Right-handed alpha
Helix 78	AI6	C	620	623	Right-handed 310
Helix 79	AI7	C	682	686	Right-handed 310
Helix 80	AI8	C	689	694	Right-handed 310
Helix 81	AI9	C	713	720	Right-handed alpha

There are 23 sheets in PDB entry 8RN2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	441	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	514	522	anti-parallel
Strand 4	A	550	562	anti-parallel
Strand 5	A	537	545	anti-parallel
Strand 6	A	324	326	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	477	487	anti-parallel
Strand 4	A	416	417	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	367	parallel
Strand 3	B	356	359	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	628	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	188	first strand
Strand 2	B	203	213	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	223	226	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	501	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	91	93	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	137	first strand
Strand 2	C	242	247	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	289	291	anti-parallel
Strand 3	C	530	532	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	494	495	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	330	337	anti-parallel
Strand 3	C	363	369	anti-parallel
Strand 4	C	372	379	anti-parallel
Strand 5	C	382	388	anti-parallel
Strand 6	C	479	481	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	347	first strand
Strand 2	C	353	358	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	474	476	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	505	506	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	649	651	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	660	662	first strand
Strand 2	C	667	669	anti-parallel
Strand 3	C	675	676	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	700	first strand
Strand 2	C	735	740	anti-parallel
Strand 3	C	725	729	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RN2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN2