Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RN3 entry

There are 5 chains in PDB entry 8RN3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 716
B	MET 1	LYS 668
C	LYS 43	ARG 741
D	ASN 360	GLU 390
E	LYS 353	ARG 386

There are 87 helices in PDB entry 8RN3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	25	Right-handed alpha
Helix 3	AA3	A	27	30	Right-handed 310
Helix 4	AA4	A	31	52	Right-handed alpha
Helix 5	AA5	A	84	99	Right-handed alpha
Helix 6	AA6	A	130	140	Right-handed alpha
Helix 7	AA7	A	163	184	Right-handed alpha
Helix 8	AA8	A	193	197	Right-handed 310
Helix 9	AA9	A	206	214	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	237	245	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	266	271	Right-handed 310
Helix 14	AB5	A	301	313	Right-handed alpha
Helix 15	AB6	A	313	318	Right-handed alpha
Helix 16	AB7	A	332	349	Right-handed alpha
Helix 17	AB8	A	358	366	Right-handed alpha
Helix 18	AB9	A	376	383	Right-handed alpha
Helix 19	AC1	A	400	411	Right-handed alpha
Helix 20	AC2	A	429	447	Right-handed alpha
Helix 21	AC3	A	449	468	Right-handed alpha
Helix 22	AC4	A	529	533	Right-handed 310
Helix 23	AC5	A	563	573	Right-handed alpha
Helix 24	AC6	A	575	595	Right-handed alpha
Helix 25	AC7	A	599	605	Right-handed alpha
Helix 26	AC8	A	628	646	Right-handed alpha
Helix 27	AC9	A	648	671	Right-handed alpha
Helix 28	AD1	A	678	688	Right-handed alpha
Helix 29	AD2	A	693	716	Right-handed alpha
Helix 30	AD3	B	7	12	Right-handed alpha
Helix 31	AD4	B	13	18	Right-handed alpha
Helix 32	AD5	B	35	49	Right-handed alpha
Helix 33	AD6	B	84	99	Right-handed alpha
Helix 34	AD7	B	101	117	Right-handed alpha
Helix 35	AD8	B	118	122	Right-handed 310
Helix 36	AD9	B	138	153	Right-handed alpha
Helix 37	AE1	B	157	161	Right-handed 310
Helix 38	AE2	B	162	173	Right-handed alpha
Helix 39	AE3	B	174	176	Right-handed 310
Helix 40	AE4	B	214	222	Right-handed alpha
Helix 41	AE5	B	245	264	Right-handed alpha
Helix 42	AE6	B	275	292	Right-handed alpha
Helix 43	AE7	B	308	313	Right-handed alpha
Helix 44	AE8	B	314	326	Right-handed alpha
Helix 45	AE9	B	330	346	Right-handed alpha
Helix 46	AF1	B	369	376	Right-handed 310
Helix 47	AF2	B	377	381	Right-handed 310
Helix 48	AF3	B	382	393	Right-handed alpha
Helix 49	AF4	B	394	396	Right-handed 310
Helix 50	AF5	B	413	426	Right-handed alpha
Helix 51	AF6	B	454	473	Right-handed alpha
Helix 52	AF7	B	517	536	Right-handed alpha
Helix 53	AF8	B	539	559	Right-handed alpha
Helix 54	AF9	B	569	582	Right-handed alpha
Helix 55	AG1	B	584	588	Right-handed 310
Helix 56	AG2	B	589	593	Right-handed 310
Helix 57	AG3	B	606	612	Right-handed alpha
Helix 58	AG4	B	613	615	Right-handed 310
Helix 59	AG5	B	616	624	Right-handed alpha
Helix 60	AG6	C	44	54	Right-handed alpha
Helix 61	AG7	C	94	105	Right-handed alpha
Helix 62	AG8	C	112	117	Right-handed alpha
Helix 63	AG9	C	117	130	Right-handed alpha
Helix 64	AH1	C	227	232	Right-handed alpha
Helix 65	AH2	C	233	238	Right-handed alpha
Helix 66	AH3	C	255	274	Right-handed alpha
Helix 67	AH4	C	277	287	Right-handed alpha
Helix 68	AH5	C	296	304	Right-handed alpha
Helix 69	AH6	C	307	318	Right-handed alpha
Helix 70	AH7	C	392	408	Right-handed alpha
Helix 71	AH8	C	409	414	Right-handed alpha
Helix 72	AH9	C	431	443	Right-handed alpha
Helix 73	AI1	C	444	450	Right-handed alpha
Helix 74	AI2	C	515	519	Right-handed 310
Helix 75	AI3	C	534	541	Right-handed 310
Helix 76	AI4	C	544	557	Right-handed alpha
Helix 77	AI5	C	557	566	Right-handed alpha
Helix 78	AI6	C	570	574	Right-handed 310
Helix 79	AI7	C	575	583	Right-handed alpha
Helix 80	AI8	C	586	606	Right-handed alpha
Helix 81	AI9	C	611	619	Right-handed alpha
Helix 82	AJ1	C	620	623	Right-handed 310
Helix 83	AJ2	C	689	693	Right-handed 310
Helix 84	AJ3	C	713	720	Right-handed alpha
Helix 85	AJ4	D	361	366	Right-handed alpha
Helix 86	AJ5	D	376	383	Right-handed alpha
Helix 87	AJ6	E	377	381	Right-handed 310

There are 24 sheets in PDB entry 8RN3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	442	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	514	522	anti-parallel
Strand 4	A	550	562	anti-parallel
Strand 5	A	537	545	anti-parallel
Strand 6	A	324	326	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	477	487	anti-parallel
Strand 4	A	416	417	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	627	first strand
Strand 2	A	615	619	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	186	first strand
Strand 2	B	205	213	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	223	226	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	503	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	91	93	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	137	first strand
Strand 2	C	242	247	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	289	291	anti-parallel
Strand 3	C	530	532	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	494	495	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	330	337	anti-parallel
Strand 3	C	363	369	anti-parallel
Strand 4	C	372	379	anti-parallel
Strand 5	C	382	389	anti-parallel
Strand 6	C	479	482	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	347	first strand
Strand 2	C	353	358	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	474	476	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	505	506	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	649	651	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	660	662	first strand
Strand 2	C	667	669	anti-parallel
Strand 3	C	675	676	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	700	first strand
Strand 2	C	735	740	anti-parallel
Strand 3	C	725	729	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	E	364	369	parallel
Strand 3	E	354	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RN3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN3