Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RN4 entry

There are 5 chains in PDB entry 8RN4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 716
B	MET 1	ILE 752
C	MET 1	GLY 249
E	GLY 354	PRO 369
D	THR 359	PRO 391

There are 75 helices in PDB entry 8RN4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	31	50	Right-handed alpha
Helix 4	AA4	A	84	100	Right-handed alpha
Helix 5	AA5	A	127	140	Right-handed alpha
Helix 6	AA6	A	163	184	Right-handed alpha
Helix 7	AA7	A	206	214	Right-handed alpha
Helix 8	AA8	A	222	233	Right-handed alpha
Helix 9	AA9	A	237	246	Right-handed alpha
Helix 10	AB1	A	266	271	Right-handed 310
Helix 11	AB2	A	301	313	Right-handed alpha
Helix 12	AB3	A	313	319	Right-handed alpha
Helix 13	AB4	A	332	349	Right-handed alpha
Helix 14	AB5	A	360	366	Right-handed alpha
Helix 15	AB6	A	376	383	Right-handed alpha
Helix 16	AB7	A	400	411	Right-handed alpha
Helix 17	AB8	A	429	448	Right-handed alpha
Helix 18	AB9	A	449	472	Right-handed alpha
Helix 19	AC1	A	529	533	Right-handed 310
Helix 20	AC2	A	563	572	Right-handed alpha
Helix 21	AC3	A	574	595	Right-handed alpha
Helix 22	AC4	A	599	605	Right-handed alpha
Helix 23	AC5	A	629	646	Right-handed alpha
Helix 24	AC6	A	648	670	Right-handed alpha
Helix 25	AC7	A	678	688	Right-handed alpha
Helix 26	AC8	A	693	716	Right-handed alpha
Helix 27	AC9	B	7	12	Right-handed alpha
Helix 28	AD1	B	17	22	Right-handed alpha
Helix 29	AD2	B	35	49	Right-handed alpha
Helix 30	AD3	B	84	99	Right-handed alpha
Helix 31	AD4	B	101	117	Right-handed alpha
Helix 32	AD5	B	118	124	Right-handed 310
Helix 33	AD6	B	138	153	Right-handed alpha
Helix 34	AD7	B	157	161	Right-handed 310
Helix 35	AD8	B	162	174	Right-handed alpha
Helix 36	AD9	B	214	222	Right-handed alpha
Helix 37	AE1	B	245	264	Right-handed alpha
Helix 38	AE2	B	276	293	Right-handed alpha
Helix 39	AE3	B	308	313	Right-handed alpha
Helix 40	AE4	B	314	326	Right-handed alpha
Helix 41	AE5	B	330	338	Right-handed alpha
Helix 42	AE6	B	338	346	Right-handed alpha
Helix 43	AE7	B	369	373	Right-handed 310
Helix 44	AE8	B	377	381	Right-handed 310
Helix 45	AE9	B	382	393	Right-handed alpha
Helix 46	AF1	B	394	396	Right-handed 310
Helix 47	AF2	B	413	426	Right-handed alpha
Helix 48	AF3	B	454	472	Right-handed alpha
Helix 49	AF4	B	517	537	Right-handed alpha
Helix 50	AF5	B	539	559	Right-handed alpha
Helix 51	AF6	B	569	582	Right-handed alpha
Helix 52	AF7	B	584	588	Right-handed 310
Helix 53	AF8	B	589	593	Right-handed 310
Helix 54	AF9	B	606	611	Right-handed alpha
Helix 55	AG1	B	616	624	Right-handed alpha
Helix 56	AG2	B	679	699	Right-handed alpha
Helix 57	AG3	B	700	703	Right-handed 310
Helix 58	AG4	B	712	731	Right-handed alpha
Helix 59	AG5	B	735	750	Right-handed alpha
Helix 60	AG6	C	2	14	Right-handed alpha
Helix 61	AG7	C	15	25	Right-handed alpha
Helix 62	AG8	C	29	34	Right-handed alpha
Helix 63	AG9	C	44	54	Right-handed alpha
Helix 64	AH1	C	64	70	Right-handed alpha
Helix 65	AH2	C	94	104	Right-handed alpha
Helix 66	AH3	C	112	117	Right-handed alpha
Helix 67	AH4	C	117	129	Right-handed alpha
Helix 68	AH5	C	157	170	Right-handed alpha
Helix 69	AH6	C	171	174	Right-handed 310
Helix 70	AH7	C	184	195	Right-handed alpha
Helix 71	AH8	C	201	214	Right-handed alpha
Helix 72	AH9	C	227	232	Right-handed alpha
Helix 73	AI1	C	233	237	Right-handed 310
Helix 74	AI2	D	360	366	Right-handed alpha
Helix 75	AI3	D	376	383	Right-handed alpha

There are 17 sheets in PDB entry 8RN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	53	54	anti-parallel
Strand 3	A	74	75	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	153	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	303	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	442	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	503	anti-parallel
Strand 3	A	515	522	anti-parallel
Strand 4	A	550	560	anti-parallel
Strand 5	A	537	545	anti-parallel
Strand 6	A	324	326	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	503	anti-parallel
Strand 3	A	476	487	anti-parallel
Strand 4	A	416	417	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	628	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	188	first strand
Strand 2	B	203	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	502	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	654	655	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	92	93	anti-parallel
Strand 3	C	80	81	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	243	247	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	148	first strand
Strand 2	C	217	222	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	355	359	first strand
Strand 2	E	364	368	anti-parallel
Strand 3	D	373	374	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RN4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN4