Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RN5 entry

There are 5 chains in PDB entry 8RN5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 716
B	MET 1	ILE 752
C	MET 1	GLY 766
D	LYS 353	SER 375
E	THR 359	CYS 387

There are 87 helices in PDB entry 8RN5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	31	49	Right-handed alpha
Helix 4	AA4	A	84	100	Right-handed alpha
Helix 5	AA5	A	127	140	Right-handed alpha
Helix 6	AA6	A	163	184	Right-handed alpha
Helix 7	AA7	A	192	197	Right-handed alpha
Helix 8	AA8	A	206	214	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	237	245	Right-handed alpha
Helix 11	AB2	A	266	271	Right-handed 310
Helix 12	AB3	A	301	313	Right-handed alpha
Helix 13	AB4	A	313	319	Right-handed alpha
Helix 14	AB5	A	332	349	Right-handed alpha
Helix 15	AB6	A	360	366	Right-handed alpha
Helix 16	AB7	A	376	383	Right-handed alpha
Helix 17	AB8	A	400	411	Right-handed alpha
Helix 18	AB9	A	429	447	Right-handed alpha
Helix 19	AC1	A	449	472	Right-handed alpha
Helix 20	AC2	A	529	533	Right-handed 310
Helix 21	AC3	A	563	572	Right-handed alpha
Helix 22	AC4	A	574	595	Right-handed alpha
Helix 23	AC5	A	599	606	Right-handed alpha
Helix 24	AC6	A	629	646	Right-handed alpha
Helix 25	AC7	A	648	670	Right-handed alpha
Helix 26	AC8	A	679	688	Right-handed alpha
Helix 27	AC9	A	693	716	Right-handed alpha
Helix 28	AD1	B	7	12	Right-handed alpha
Helix 29	AD2	B	17	22	Right-handed alpha
Helix 30	AD3	B	35	49	Right-handed alpha
Helix 31	AD4	B	84	99	Right-handed alpha
Helix 32	AD5	B	101	117	Right-handed alpha
Helix 33	AD6	B	118	124	Right-handed 310
Helix 34	AD7	B	138	152	Right-handed alpha
Helix 35	AD8	B	157	161	Right-handed 310
Helix 36	AD9	B	162	174	Right-handed alpha
Helix 37	AE1	B	214	222	Right-handed alpha
Helix 38	AE2	B	248	266	Right-handed alpha
Helix 39	AE3	B	276	293	Right-handed alpha
Helix 40	AE4	B	308	312	Right-handed 310
Helix 41	AE5	B	314	326	Right-handed alpha
Helix 42	AE6	B	330	338	Right-handed alpha
Helix 43	AE7	B	338	346	Right-handed alpha
Helix 44	AE8	B	369	376	Right-handed 310
Helix 45	AE9	B	377	381	Right-handed 310
Helix 46	AF1	B	382	393	Right-handed alpha
Helix 47	AF2	B	413	426	Right-handed alpha
Helix 48	AF3	B	454	472	Right-handed alpha
Helix 49	AF4	B	517	536	Right-handed alpha
Helix 50	AF5	B	539	559	Right-handed alpha
Helix 51	AF6	B	569	582	Right-handed alpha
Helix 52	AF7	B	589	593	Right-handed 310
Helix 53	AF8	B	599	603	Right-handed 310
Helix 54	AF9	B	606	611	Right-handed alpha
Helix 55	AG1	B	616	624	Right-handed alpha
Helix 56	AG2	B	632	640	Right-handed 310
Helix 57	AG3	B	685	699	Right-handed alpha
Helix 58	AG4	B	700	705	Right-handed alpha
Helix 59	AG5	B	712	731	Right-handed alpha
Helix 60	AG6	B	735	750	Right-handed alpha
Helix 61	AG7	C	2	15	Right-handed alpha
Helix 62	AG8	C	15	25	Right-handed alpha
Helix 63	AG9	C	29	36	Right-handed alpha
Helix 64	AH1	C	44	55	Right-handed alpha
Helix 65	AH2	C	64	69	Right-handed alpha
Helix 66	AH3	C	94	104	Right-handed alpha
Helix 67	AH4	C	112	117	Right-handed alpha
Helix 68	AH5	C	117	130	Right-handed alpha
Helix 69	AH6	C	157	170	Right-handed alpha
Helix 70	AH7	C	184	196	Right-handed alpha
Helix 71	AH8	C	201	214	Right-handed alpha
Helix 72	AH9	C	227	233	Right-handed alpha
Helix 73	AI1	C	233	238	Right-handed alpha
Helix 74	AI2	C	257	275	Right-handed alpha
Helix 75	AI3	C	277	288	Right-handed alpha
Helix 76	AI4	C	307	317	Right-handed alpha
Helix 77	AI5	C	392	408	Right-handed alpha
Helix 78	AI6	C	409	415	Right-handed alpha
Helix 79	AI7	C	431	443	Right-handed alpha
Helix 80	AI8	C	446	452	Right-handed alpha
Helix 81	AI9	C	515	519	Right-handed 310
Helix 82	AJ1	C	705	709	Right-handed 310
Helix 83	AJ2	C	713	720	Right-handed alpha
Helix 84	AJ3	C	746	766	Right-handed alpha
Helix 85	AJ4	D	369	373	Right-handed 310
Helix 86	AJ5	E	360	366	Right-handed alpha
Helix 87	AJ6	E	376	383	Right-handed alpha

There are 21 sheets in PDB entry 8RN5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	60	62	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	153	156	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	303	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	442	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	514	522	anti-parallel
Strand 4	A	550	562	anti-parallel
Strand 5	A	537	545	anti-parallel
Strand 6	A	324	326	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	477	487	anti-parallel
Strand 4	A	416	417	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	628	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	B	2	3	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	188	first strand
Strand 2	B	203	213	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel
Strand 5	B	396	397	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	501	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	91	93	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	243	247	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	148	first strand
Strand 2	C	217	222	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	291	first strand
Strand 2	C	530	532	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	330	336	anti-parallel
Strand 3	C	363	369	anti-parallel
Strand 4	C	372	379	anti-parallel
Strand 5	C	382	388	anti-parallel
Strand 6	C	479	481	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	347	first strand
Strand 2	C	353	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	700	first strand
Strand 2	C	735	740	anti-parallel
Strand 3	C	725	729	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	359	first strand
Strand 2	D	364	368	anti-parallel
Strand 3	E	373	374	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RN5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN5