Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RN6 entry

There are 3 chains in PDB entry 8RN6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 716
B	MET 1	LYS 668
C	LYS 43	GLY 249

There are 64 helices in PDB entry 8RN6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	31	50	Right-handed alpha
Helix 4	AA4	A	84	100	Right-handed alpha
Helix 5	AA5	A	130	139	Right-handed alpha
Helix 6	AA6	A	163	184	Right-handed alpha
Helix 7	AA7	A	206	215	Right-handed alpha
Helix 8	AA8	A	222	231	Right-handed alpha
Helix 9	AA9	A	237	244	Right-handed alpha
Helix 10	AB1	A	258	262	Right-handed 310
Helix 11	AB2	A	266	271	Right-handed 310
Helix 12	AB3	A	301	313	Right-handed alpha
Helix 13	AB4	A	313	319	Right-handed alpha
Helix 14	AB5	A	332	349	Right-handed alpha
Helix 15	AB6	A	358	366	Right-handed alpha
Helix 16	AB7	A	376	383	Right-handed alpha
Helix 17	AB8	A	400	411	Right-handed alpha
Helix 18	AB9	A	429	447	Right-handed alpha
Helix 19	AC1	A	449	468	Right-handed alpha
Helix 20	AC2	A	525	533	Right-handed 310
Helix 21	AC3	A	563	573	Right-handed alpha
Helix 22	AC4	A	574	595	Right-handed alpha
Helix 23	AC5	A	599	605	Right-handed alpha
Helix 24	AC6	A	629	646	Right-handed alpha
Helix 25	AC7	A	648	670	Right-handed alpha
Helix 26	AC8	A	678	688	Right-handed alpha
Helix 27	AC9	A	693	716	Right-handed alpha
Helix 28	AD1	B	7	12	Right-handed alpha
Helix 29	AD2	B	13	18	Right-handed alpha
Helix 30	AD3	B	35	49	Right-handed alpha
Helix 31	AD4	B	84	99	Right-handed alpha
Helix 32	AD5	B	101	117	Right-handed alpha
Helix 33	AD6	B	118	122	Right-handed 310
Helix 34	AD7	B	138	153	Right-handed alpha
Helix 35	AD8	B	157	161	Right-handed 310
Helix 36	AD9	B	162	173	Right-handed alpha
Helix 37	AE1	B	174	176	Right-handed 310
Helix 38	AE2	B	214	222	Right-handed alpha
Helix 39	AE3	B	245	264	Right-handed alpha
Helix 40	AE4	B	275	292	Right-handed alpha
Helix 41	AE5	B	308	313	Right-handed alpha
Helix 42	AE6	B	314	326	Right-handed alpha
Helix 43	AE7	B	330	338	Right-handed alpha
Helix 44	AE8	B	338	346	Right-handed alpha
Helix 45	AE9	B	377	381	Right-handed 310
Helix 46	AF1	B	382	393	Right-handed alpha
Helix 47	AF2	B	394	396	Right-handed 310
Helix 48	AF3	B	410	412	Right-handed 310
Helix 49	AF4	B	413	426	Right-handed alpha
Helix 50	AF5	B	454	472	Right-handed alpha
Helix 51	AF6	B	517	536	Right-handed alpha
Helix 52	AF7	B	539	559	Right-handed alpha
Helix 53	AF8	B	571	582	Right-handed alpha
Helix 54	AF9	B	584	588	Right-handed 310
Helix 55	AG1	B	589	593	Right-handed 310
Helix 56	AG2	B	606	612	Right-handed alpha
Helix 57	AG3	B	613	615	Right-handed 310
Helix 58	AG4	B	616	624	Right-handed alpha
Helix 59	AG5	C	44	54	Right-handed alpha
Helix 60	AG6	C	65	70	Right-handed 310
Helix 61	AG7	C	94	105	Right-handed alpha
Helix 62	AG8	C	112	117	Right-handed alpha
Helix 63	AG9	C	117	129	Right-handed alpha
Helix 64	AH1	C	228	233	Right-handed alpha

There are 14 sheets in PDB entry 8RN6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	441	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	514	522	anti-parallel
Strand 4	A	550	562	anti-parallel
Strand 5	A	537	545	anti-parallel
Strand 6	A	323	326	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	477	487	anti-parallel
Strand 4	A	416	417	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	369	parallel
Strand 3	B	354	359	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	628	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	189	first strand
Strand 2	B	202	213	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	223	225	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	503	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	92	93	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	137	first strand
Strand 2	C	242	247	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RN6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN6