Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RN8 entry

There are 6 chains in PDB entry 8RN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 716
B	MET 1	LYS 668
C	LYS 43	ARG 741
D	GLY 199	VAL 716
E	MET 1	TRP 665
F	GLU 42	GLY 249

There are140 helices in PDB entry 8RN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	25	Right-handed alpha
Helix 3	AA3	A	27	30	Right-handed 310
Helix 4	AA4	A	31	52	Right-handed alpha
Helix 5	AA5	A	84	99	Right-handed alpha
Helix 6	AA6	A	130	139	Right-handed alpha
Helix 7	AA7	A	163	184	Right-handed alpha
Helix 8	AA8	A	192	198	Right-handed 310
Helix 9	AA9	A	206	214	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	237	245	Right-handed alpha
Helix 12	AB3	A	258	262	Right-handed 310
Helix 13	AB4	A	266	271	Right-handed 310
Helix 14	AB5	A	301	313	Right-handed alpha
Helix 15	AB6	A	313	319	Right-handed alpha
Helix 16	AB7	A	332	349	Right-handed alpha
Helix 17	AB8	A	358	366	Right-handed alpha
Helix 18	AB9	A	376	383	Right-handed alpha
Helix 19	AC1	A	400	411	Right-handed alpha
Helix 20	AC2	A	429	447	Right-handed alpha
Helix 21	AC3	A	449	468	Right-handed alpha
Helix 22	AC4	A	529	533	Right-handed 310
Helix 23	AC5	A	563	573	Right-handed alpha
Helix 24	AC6	A	575	595	Right-handed alpha
Helix 25	AC7	A	599	605	Right-handed alpha
Helix 26	AC8	A	628	646	Right-handed alpha
Helix 27	AC9	A	648	671	Right-handed alpha
Helix 28	AD1	A	678	688	Right-handed alpha
Helix 29	AD2	A	693	716	Right-handed alpha
Helix 30	AD3	B	7	12	Right-handed alpha
Helix 31	AD4	B	13	18	Right-handed alpha
Helix 32	AD5	B	35	49	Right-handed alpha
Helix 33	AD6	B	84	99	Right-handed alpha
Helix 34	AD7	B	101	117	Right-handed alpha
Helix 35	AD8	B	118	122	Right-handed 310
Helix 36	AD9	B	138	153	Right-handed alpha
Helix 37	AE1	B	162	173	Right-handed alpha
Helix 38	AE2	B	174	176	Right-handed 310
Helix 39	AE3	B	214	222	Right-handed alpha
Helix 40	AE4	B	245	264	Right-handed alpha
Helix 41	AE5	B	275	292	Right-handed alpha
Helix 42	AE6	B	308	313	Right-handed alpha
Helix 43	AE7	B	314	326	Right-handed alpha
Helix 44	AE8	B	330	346	Right-handed alpha
Helix 45	AE9	B	369	373	Right-handed 310
Helix 46	AF1	B	377	381	Right-handed 310
Helix 47	AF2	B	382	393	Right-handed alpha
Helix 48	AF3	B	394	396	Right-handed 310
Helix 49	AF4	B	413	426	Right-handed alpha
Helix 50	AF5	B	454	473	Right-handed alpha
Helix 51	AF6	B	517	536	Right-handed alpha
Helix 52	AF7	B	539	559	Right-handed alpha
Helix 53	AF8	B	569	582	Right-handed alpha
Helix 54	AF9	B	584	588	Right-handed 310
Helix 55	AG1	B	589	593	Right-handed 310
Helix 56	AG2	B	606	612	Right-handed alpha
Helix 57	AG3	B	613	615	Right-handed 310
Helix 58	AG4	B	616	624	Right-handed alpha
Helix 59	AG5	C	44	54	Right-handed alpha
Helix 60	AG6	C	94	105	Right-handed alpha
Helix 61	AG7	C	112	117	Right-handed alpha
Helix 62	AG8	C	117	130	Right-handed alpha
Helix 63	AG9	C	227	232	Right-handed alpha
Helix 64	AH1	C	233	238	Right-handed alpha
Helix 65	AH2	C	255	274	Right-handed alpha
Helix 66	AH3	C	277	288	Right-handed alpha
Helix 67	AH4	C	296	304	Right-handed alpha
Helix 68	AH5	C	307	318	Right-handed alpha
Helix 69	AH6	C	392	408	Right-handed alpha
Helix 70	AH7	C	409	414	Right-handed alpha
Helix 71	AH8	C	431	443	Right-handed alpha
Helix 72	AH9	C	444	450	Right-handed alpha
Helix 73	AI1	C	515	519	Right-handed 310
Helix 74	AI2	C	534	541	Right-handed 310
Helix 75	AI3	C	544	557	Right-handed alpha
Helix 76	AI4	C	557	566	Right-handed alpha
Helix 77	AI5	C	570	574	Right-handed 310
Helix 78	AI6	C	575	583	Right-handed alpha
Helix 79	AI7	C	586	606	Right-handed alpha
Helix 80	AI8	C	611	619	Right-handed alpha
Helix 81	AI9	C	620	624	Right-handed 310
Helix 82	AJ1	C	689	694	Right-handed 310
Helix 83	AJ2	C	713	720	Right-handed alpha
Helix 84	AJ3	D	205	215	Right-handed alpha
Helix 85	AJ4	D	222	233	Right-handed alpha
Helix 86	AJ5	D	237	246	Right-handed alpha
Helix 87	AJ6	D	266	271	Right-handed 310
Helix 88	AJ7	D	301	313	Right-handed alpha
Helix 89	AJ8	D	313	319	Right-handed alpha
Helix 90	AJ9	D	332	349	Right-handed alpha
Helix 91	AK1	D	360	366	Right-handed alpha
Helix 92	AK2	D	376	383	Right-handed alpha
Helix 93	AK3	D	400	411	Right-handed alpha
Helix 94	AK4	D	429	447	Right-handed alpha
Helix 95	AK5	D	449	472	Right-handed alpha
Helix 96	AK6	D	529	533	Right-handed 310
Helix 97	AK7	D	563	572	Right-handed alpha
Helix 98	AK8	D	574	595	Right-handed alpha
Helix 99	AK9	D	599	605	Right-handed alpha
Helix 100	AL1	D	629	646	Right-handed alpha
Helix 101	AL2	D	648	670	Right-handed alpha
Helix 102	AL3	D	679	688	Right-handed alpha
Helix 103	AL4	D	693	716	Right-handed alpha
Helix 104	AL5	E	5	10	Right-handed 310
Helix 105	AL6	E	17	22	Right-handed alpha
Helix 106	AL7	E	35	49	Right-handed alpha
Helix 107	AL8	E	84	99	Right-handed alpha
Helix 108	AL9	E	101	117	Right-handed alpha
Helix 109	AM1	E	118	124	Right-handed 310
Helix 110	AM2	E	138	153	Right-handed alpha
Helix 111	AM3	E	162	174	Right-handed alpha
Helix 112	AM4	E	214	222	Right-handed alpha
Helix 113	AM5	E	245	265	Right-handed alpha
Helix 114	AM6	E	276	293	Right-handed alpha
Helix 115	AM7	E	308	313	Right-handed alpha
Helix 116	AM8	E	314	326	Right-handed alpha
Helix 117	AM9	E	330	338	Right-handed alpha
Helix 118	AN1	E	338	346	Right-handed alpha
Helix 119	AN2	E	369	373	Right-handed 310
Helix 120	AN3	E	377	381	Right-handed 310
Helix 121	AN4	E	382	393	Right-handed alpha
Helix 122	AN5	E	394	396	Right-handed 310
Helix 123	AN6	E	413	426	Right-handed alpha
Helix 124	AN7	E	454	472	Right-handed alpha
Helix 125	AN8	E	517	536	Right-handed alpha
Helix 126	AN9	E	539	559	Right-handed alpha
Helix 127	AO1	E	569	582	Right-handed alpha
Helix 128	AO2	E	584	588	Right-handed 310
Helix 129	AO3	E	589	593	Right-handed 310
Helix 130	AO4	E	599	603	Right-handed 310
Helix 131	AO5	E	606	611	Right-handed alpha
Helix 132	AO6	E	616	624	Right-handed alpha
Helix 133	AO7	E	661	665	Right-handed 310
Helix 134	AO8	F	44	54	Right-handed alpha
Helix 135	AO9	F	64	69	Right-handed alpha
Helix 136	AP1	F	94	104	Right-handed alpha
Helix 137	AP2	F	112	117	Right-handed alpha
Helix 138	AP3	F	117	129	Right-handed alpha
Helix 139	AP4	F	227	234	Right-handed alpha
Helix 140	AP5	F	235	237	Right-handed 310

There are 37 sheets in PDB entry 8RN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	442	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	514	522	anti-parallel
Strand 4	A	550	562	anti-parallel
Strand 5	A	537	545	anti-parallel
Strand 6	A	324	326	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	477	487	anti-parallel
Strand 4	A	416	417	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	368	parallel
Strand 3	B	355	359	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	627	first strand
Strand 2	A	615	620	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	186	first strand
Strand 2	B	205	213	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	223	226	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	503	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	91	93	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	137	first strand
Strand 2	C	242	247	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	289	291	anti-parallel
Strand 3	C	530	532	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	330	337	anti-parallel
Strand 3	C	363	369	anti-parallel
Strand 4	C	372	379	anti-parallel
Strand 5	C	382	389	anti-parallel
Strand 6	C	480	482	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	347	first strand
Strand 2	C	353	360	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	474	476	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	505	506	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	649	651	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	660	662	first strand
Strand 2	C	667	669	anti-parallel
Strand 3	C	675	676	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	700	first strand
Strand 2	C	735	740	anti-parallel
Strand 3	C	725	729	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	256	first strand
Strand 2	D	675	676	anti-parallel
Strand 3	E	482	485	anti-parallel
Strand 4	E	298	303	anti-parallel
Strand 5	E	445	452	anti-parallel
Strand 6	E	435	442	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	295	first strand
Strand 2	D	492	503	anti-parallel
Strand 3	D	514	522	anti-parallel
Strand 4	D	550	562	anti-parallel
Strand 5	D	537	545	anti-parallel
Strand 6	D	323	326	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	295	first strand
Strand 2	D	492	503	anti-parallel
Strand 3	D	476	487	anti-parallel
Strand 4	D	416	417	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	E	364	368	parallel
Strand 3	E	355	359	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	628	first strand
Strand 2	D	614	620	anti-parallel
Strand 3	E	2	3	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	57	first strand
Strand 2	E	64	67	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	135	137	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	188	first strand
Strand 2	E	203	213	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	244	first strand
Strand 2	E	223	228	anti-parallel
Strand 3	E	348	350	parallel
Strand 4	E	401	403	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	488	491	first strand
Strand 2	E	494	497	anti-parallel
Strand 3	E	500	501	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	641	642	first strand
Strand 2	E	654	655	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	92	93	anti-parallel
Strand 3	F	80	81	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	77	78	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	136	first strand
Strand 2	F	243	247	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	147	first strand
Strand 2	F	218	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN8