Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RN9 entry

There are 5 chains in PDB entry 8RN9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 716
B	MET 1	ILE 752
C	MET 1	GLY 766
D	LYS 353	SER 375
E	THR 359	CYS 387

There are 93 helices in PDB entry 8RN9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	31	50	Right-handed alpha
Helix 4	AA4	A	84	100	Right-handed alpha
Helix 5	AA5	A	127	140	Right-handed alpha
Helix 6	AA6	A	163	184	Right-handed alpha
Helix 7	AA7	A	185	190	Right-handed alpha
Helix 8	AA8	A	206	215	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	237	246	Right-handed alpha
Helix 11	AB2	A	266	270	Right-handed 310
Helix 12	AB3	A	301	313	Right-handed alpha
Helix 13	AB4	A	313	318	Right-handed alpha
Helix 14	AB5	A	332	349	Right-handed alpha
Helix 15	AB6	A	360	366	Right-handed alpha
Helix 16	AB7	A	376	383	Right-handed alpha
Helix 17	AB8	A	401	410	Right-handed alpha
Helix 18	AB9	A	429	447	Right-handed alpha
Helix 19	AC1	A	449	472	Right-handed alpha
Helix 20	AC2	A	525	533	Right-handed 310
Helix 21	AC3	A	564	572	Right-handed alpha
Helix 22	AC4	A	574	595	Right-handed alpha
Helix 23	AC5	A	599	605	Right-handed alpha
Helix 24	AC6	A	629	646	Right-handed alpha
Helix 25	AC7	A	648	670	Right-handed alpha
Helix 26	AC8	A	678	688	Right-handed alpha
Helix 27	AC9	A	693	714	Right-handed alpha
Helix 28	AD1	B	7	12	Right-handed alpha
Helix 29	AD2	B	17	22	Right-handed alpha
Helix 30	AD3	B	35	50	Right-handed alpha
Helix 31	AD4	B	84	99	Right-handed alpha
Helix 32	AD5	B	101	117	Right-handed alpha
Helix 33	AD6	B	118	124	Right-handed 310
Helix 34	AD7	B	138	153	Right-handed alpha
Helix 35	AD8	B	162	174	Right-handed alpha
Helix 36	AD9	B	214	222	Right-handed alpha
Helix 37	AE1	B	245	266	Right-handed alpha
Helix 38	AE2	B	275	293	Right-handed alpha
Helix 39	AE3	B	314	326	Right-handed alpha
Helix 40	AE4	B	330	338	Right-handed alpha
Helix 41	AE5	B	338	346	Right-handed alpha
Helix 42	AE6	B	369	376	Right-handed 310
Helix 43	AE7	B	377	381	Right-handed 310
Helix 44	AE8	B	382	393	Right-handed alpha
Helix 45	AE9	B	394	396	Right-handed 310
Helix 46	AF1	B	413	426	Right-handed alpha
Helix 47	AF2	B	454	471	Right-handed alpha
Helix 48	AF3	B	517	537	Right-handed alpha
Helix 49	AF4	B	539	558	Right-handed alpha
Helix 50	AF5	B	569	582	Right-handed alpha
Helix 51	AF6	B	589	593	Right-handed 310
Helix 52	AF7	B	599	603	Right-handed 310
Helix 53	AF8	B	606	611	Right-handed alpha
Helix 54	AF9	B	616	624	Right-handed alpha
Helix 55	AG1	B	632	639	Right-handed 310
Helix 56	AG2	B	685	699	Right-handed alpha
Helix 57	AG3	B	712	731	Right-handed alpha
Helix 58	AG4	B	735	750	Right-handed alpha
Helix 59	AG5	C	2	15	Right-handed alpha
Helix 60	AG6	C	15	25	Right-handed alpha
Helix 61	AG7	C	29	35	Right-handed alpha
Helix 62	AG8	C	44	55	Right-handed alpha
Helix 63	AG9	C	65	70	Right-handed 310
Helix 64	AH1	C	94	104	Right-handed alpha
Helix 65	AH2	C	111	116	Right-handed alpha
Helix 66	AH3	C	117	129	Right-handed alpha
Helix 67	AH4	C	157	170	Right-handed alpha
Helix 68	AH5	C	184	196	Right-handed alpha
Helix 69	AH6	C	201	214	Right-handed alpha
Helix 70	AH7	C	227	233	Right-handed alpha
Helix 71	AH8	C	233	238	Right-handed alpha
Helix 72	AH9	C	257	275	Right-handed alpha
Helix 73	AI1	C	277	289	Right-handed alpha
Helix 74	AI2	C	307	317	Right-handed alpha
Helix 75	AI3	C	392	408	Right-handed alpha
Helix 76	AI4	C	409	415	Right-handed alpha
Helix 77	AI5	C	431	443	Right-handed alpha
Helix 78	AI6	C	446	452	Right-handed alpha
Helix 79	AI7	C	542	557	Right-handed alpha
Helix 80	AI8	C	557	568	Right-handed alpha
Helix 81	AI9	C	569	573	Right-handed 310
Helix 82	AJ1	C	575	577	Right-handed 310
Helix 83	AJ2	C	578	583	Right-handed alpha
Helix 84	AJ3	C	586	608	Right-handed alpha
Helix 85	AJ4	C	611	619	Right-handed alpha
Helix 86	AJ5	C	620	623	Right-handed 310
Helix 87	AJ6	C	680	689	Right-handed alpha
Helix 88	AJ7	C	705	709	Right-handed 310
Helix 89	AJ8	C	713	720	Right-handed alpha
Helix 90	AJ9	C	746	766	Right-handed alpha
Helix 91	AK1	D	369	373	Right-handed 310
Helix 92	AK2	E	360	366	Right-handed alpha
Helix 93	AK3	E	376	383	Right-handed alpha

There are 25 sheets in PDB entry 8RN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	60	62	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	303	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	442	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	513	522	anti-parallel
Strand 4	A	550	563	anti-parallel
Strand 5	A	537	538	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	477	487	anti-parallel
Strand 3	A	492	502	anti-parallel
Strand 4	A	513	522	anti-parallel
Strand 5	A	550	563	anti-parallel
Strand 6	A	542	545	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	367	parallel
Strand 3	B	356	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	628	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	188	first strand
Strand 2	B	203	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	502	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	654	655	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	91	93	anti-parallel
Strand 3	C	80	81	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	243	247	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	148	first strand
Strand 2	C	217	222	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	530	531	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	330	336	anti-parallel
Strand 3	C	363	369	anti-parallel
Strand 4	C	372	379	anti-parallel
Strand 5	C	382	388	anti-parallel
Strand 6	C	479	481	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	347	first strand
Strand 2	C	353	360	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	505	506	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	649	651	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	662	first strand
Strand 2	C	667	670	anti-parallel
Strand 3	C	674	676	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	700	first strand
Strand 2	C	735	740	anti-parallel
Strand 3	C	725	729	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	359	first strand
Strand 2	D	364	368	anti-parallel
Strand 3	E	373	374	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RN9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RN9