Analysis of interatomic Contacts of Structural Units in PDB entry:
8RNA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RNA entry

There are 10 chains in PDB entry 8RNA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 716
B	MET 1	ILE 752
C	MET 1	GLY 766
D	MET 1	VAL 716
E	MET 1	ILE 752
F	MET 1	ARG 743
G	MET 1	ALA 155
X	GLY 199	VAL 716
Y	MET 1	TRP 665
Z	GLU 42	GLY 249

There are242 helices in PDB entry 8RNA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	31	50	Right-handed alpha
Helix 4	AA4	A	84	100	Right-handed alpha
Helix 5	AA5	A	127	140	Right-handed alpha
Helix 6	AA6	A	163	184	Right-handed alpha
Helix 7	AA7	A	185	190	Right-handed alpha
Helix 8	AA8	A	206	215	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	237	246	Right-handed alpha
Helix 11	AB2	A	266	270	Right-handed 310
Helix 12	AB3	A	301	313	Right-handed alpha
Helix 13	AB4	A	313	318	Right-handed alpha
Helix 14	AB5	A	332	349	Right-handed alpha
Helix 15	AB6	A	360	366	Right-handed alpha
Helix 16	AB7	A	376	383	Right-handed alpha
Helix 17	AB8	A	401	410	Right-handed alpha
Helix 18	AB9	A	429	447	Right-handed alpha
Helix 19	AC1	A	449	472	Right-handed alpha
Helix 20	AC2	A	525	533	Right-handed 310
Helix 21	AC3	A	564	572	Right-handed alpha
Helix 22	AC4	A	574	595	Right-handed alpha
Helix 23	AC5	A	599	605	Right-handed alpha
Helix 24	AC6	A	629	646	Right-handed alpha
Helix 25	AC7	A	648	670	Right-handed alpha
Helix 26	AC8	A	678	688	Right-handed alpha
Helix 27	AC9	A	693	714	Right-handed alpha
Helix 28	AD1	B	7	12	Right-handed alpha
Helix 29	AD2	B	17	22	Right-handed alpha
Helix 30	AD3	B	35	50	Right-handed alpha
Helix 31	AD4	B	84	99	Right-handed alpha
Helix 32	AD5	B	101	117	Right-handed alpha
Helix 33	AD6	B	118	124	Right-handed 310
Helix 34	AD7	B	138	153	Right-handed alpha
Helix 35	AD8	B	162	174	Right-handed alpha
Helix 36	AD9	B	214	222	Right-handed alpha
Helix 37	AE1	B	245	266	Right-handed alpha
Helix 38	AE2	B	275	293	Right-handed alpha
Helix 39	AE3	B	314	326	Right-handed alpha
Helix 40	AE4	B	330	338	Right-handed alpha
Helix 41	AE5	B	338	346	Right-handed alpha
Helix 42	AE6	B	369	376	Right-handed 310
Helix 43	AE7	B	377	381	Right-handed 310
Helix 44	AE8	B	382	393	Right-handed alpha
Helix 45	AE9	B	394	396	Right-handed 310
Helix 46	AF1	B	413	426	Right-handed alpha
Helix 47	AF2	B	454	471	Right-handed alpha
Helix 48	AF3	B	517	537	Right-handed alpha
Helix 49	AF4	B	539	558	Right-handed alpha
Helix 50	AF5	B	569	582	Right-handed alpha
Helix 51	AF6	B	589	593	Right-handed 310
Helix 52	AF7	B	599	603	Right-handed 310
Helix 53	AF8	B	606	611	Right-handed alpha
Helix 54	AF9	B	616	624	Right-handed alpha
Helix 55	AG1	B	632	639	Right-handed 310
Helix 56	AG2	B	685	699	Right-handed alpha
Helix 57	AG3	B	712	731	Right-handed alpha
Helix 58	AG4	B	735	750	Right-handed alpha
Helix 59	AG5	C	2	15	Right-handed alpha
Helix 60	AG6	C	15	25	Right-handed alpha
Helix 61	AG7	C	29	35	Right-handed alpha
Helix 62	AG8	C	44	55	Right-handed alpha
Helix 63	AG9	C	65	70	Right-handed 310
Helix 64	AH1	C	94	104	Right-handed alpha
Helix 65	AH2	C	111	116	Right-handed alpha
Helix 66	AH3	C	117	129	Right-handed alpha
Helix 67	AH4	C	157	170	Right-handed alpha
Helix 68	AH5	C	184	196	Right-handed alpha
Helix 69	AH6	C	201	214	Right-handed alpha
Helix 70	AH7	C	227	233	Right-handed alpha
Helix 71	AH8	C	233	238	Right-handed alpha
Helix 72	AH9	C	257	275	Right-handed alpha
Helix 73	AI1	C	277	289	Right-handed alpha
Helix 74	AI2	C	307	317	Right-handed alpha
Helix 75	AI3	C	392	408	Right-handed alpha
Helix 76	AI4	C	409	415	Right-handed alpha
Helix 77	AI5	C	431	443	Right-handed alpha
Helix 78	AI6	C	446	452	Right-handed alpha
Helix 79	AI7	C	542	557	Right-handed alpha
Helix 80	AI8	C	557	568	Right-handed alpha
Helix 81	AI9	C	569	573	Right-handed 310
Helix 82	AJ1	C	575	577	Right-handed 310
Helix 83	AJ2	C	578	583	Right-handed alpha
Helix 84	AJ3	C	586	608	Right-handed alpha
Helix 85	AJ4	C	611	619	Right-handed alpha
Helix 86	AJ5	C	620	623	Right-handed 310
Helix 87	AJ6	C	680	689	Right-handed alpha
Helix 88	AJ7	C	705	709	Right-handed 310
Helix 89	AJ8	C	713	720	Right-handed alpha
Helix 90	AJ9	C	746	766	Right-handed alpha
Helix 91	AK1	D	2	9	Right-handed alpha
Helix 92	AK2	D	10	22	Right-handed alpha
Helix 93	AK3	D	23	25	Right-handed 310
Helix 94	AK4	D	32	49	Right-handed alpha
Helix 95	AK5	D	84	100	Right-handed alpha
Helix 96	AK6	D	127	140	Right-handed alpha
Helix 97	AK7	D	163	182	Right-handed alpha
Helix 98	AK8	D	183	185	Right-handed 310
Helix 99	AK9	D	193	198	Right-handed 310
Helix 100	AL1	D	205	214	Right-handed alpha
Helix 101	AL2	D	222	233	Right-handed alpha
Helix 102	AL3	D	237	246	Right-handed alpha
Helix 103	AL4	D	258	262	Right-handed 310
Helix 104	AL5	D	266	271	Right-handed 310
Helix 105	AL6	D	301	313	Right-handed alpha
Helix 106	AL7	D	313	318	Right-handed alpha
Helix 107	AL8	D	332	349	Right-handed alpha
Helix 108	AL9	D	358	366	Right-handed alpha
Helix 109	AM1	D	376	383	Right-handed alpha
Helix 110	AM2	D	400	411	Right-handed alpha
Helix 111	AM3	D	429	447	Right-handed alpha
Helix 112	AM4	D	449	469	Right-handed alpha
Helix 113	AM5	D	525	533	Right-handed 310
Helix 114	AM6	D	563	573	Right-handed alpha
Helix 115	AM7	D	575	595	Right-handed alpha
Helix 116	AM8	D	599	605	Right-handed alpha
Helix 117	AM9	D	629	646	Right-handed alpha
Helix 118	AN1	D	648	670	Right-handed alpha
Helix 119	AN2	D	678	688	Right-handed alpha
Helix 120	AN3	D	693	715	Right-handed alpha
Helix 121	AN4	E	7	12	Right-handed alpha
Helix 122	AN5	E	13	18	Right-handed alpha
Helix 123	AN6	E	35	49	Right-handed alpha
Helix 124	AN7	E	84	99	Right-handed alpha
Helix 125	AN8	E	101	117	Right-handed alpha
Helix 126	AN9	E	118	124	Right-handed 310
Helix 127	AO1	E	138	153	Right-handed alpha
Helix 128	AO2	E	156	161	Right-handed alpha
Helix 129	AO3	E	162	174	Right-handed alpha
Helix 130	AO4	E	214	222	Right-handed alpha
Helix 131	AO5	E	248	265	Right-handed alpha
Helix 132	AO6	E	275	292	Right-handed alpha
Helix 133	AO7	E	314	326	Right-handed alpha
Helix 134	AO8	E	330	346	Right-handed alpha
Helix 135	AO9	E	371	373	Right-handed 310
Helix 136	AP1	E	377	381	Right-handed 310
Helix 137	AP2	E	382	393	Right-handed alpha
Helix 138	AP3	E	413	426	Right-handed alpha
Helix 139	AP4	E	454	472	Right-handed alpha
Helix 140	AP5	E	477	480	Right-handed 310
Helix 141	AP6	E	517	536	Right-handed alpha
Helix 142	AP7	E	539	559	Right-handed alpha
Helix 143	AP8	E	569	582	Right-handed alpha
Helix 144	AP9	E	589	593	Right-handed 310
Helix 145	AQ1	E	599	603	Right-handed 310
Helix 146	AQ2	E	606	612	Right-handed alpha
Helix 147	AQ3	E	613	615	Right-handed 310
Helix 148	AQ4	E	616	624	Right-handed alpha
Helix 149	AQ5	E	675	684	Right-handed alpha
Helix 150	AQ6	E	687	702	Right-handed alpha
Helix 151	AQ7	E	712	732	Right-handed alpha
Helix 152	AQ8	E	735	750	Right-handed alpha
Helix 153	AQ9	F	2	15	Right-handed alpha
Helix 154	AR1	F	15	25	Right-handed alpha
Helix 155	AR2	F	26	39	Right-handed alpha
Helix 156	AR3	F	44	55	Right-handed alpha
Helix 157	AR4	F	64	70	Right-handed alpha
Helix 158	AR5	F	94	105	Right-handed alpha
Helix 159	AR6	F	112	117	Right-handed alpha
Helix 160	AR7	F	117	129	Right-handed alpha
Helix 161	AR8	F	228	232	Right-handed alpha
Helix 162	AR9	F	233	237	Right-handed 310
Helix 163	AS1	F	255	275	Right-handed alpha
Helix 164	AS2	F	277	288	Right-handed alpha
Helix 165	AS3	F	296	303	Right-handed alpha
Helix 166	AS4	F	308	318	Right-handed alpha
Helix 167	AS5	F	392	408	Right-handed alpha
Helix 168	AS6	F	409	415	Right-handed alpha
Helix 169	AS7	F	431	443	Right-handed alpha
Helix 170	AS8	F	444	452	Right-handed alpha
Helix 171	AS9	F	534	541	Right-handed 310
Helix 172	AT1	F	542	557	Right-handed alpha
Helix 173	AT2	F	557	568	Right-handed alpha
Helix 174	AT3	F	570	574	Right-handed 310
Helix 175	AT4	F	575	583	Right-handed alpha
Helix 176	AT5	F	586	607	Right-handed alpha
Helix 177	AT6	F	611	619	Right-handed alpha
Helix 178	AT7	F	620	623	Right-handed 310
Helix 179	AT8	F	682	686	Right-handed 310
Helix 180	AT9	F	705	709	Right-handed 310
Helix 181	AU1	F	713	719	Right-handed alpha
Helix 182	AU2	G	2	12	Right-handed alpha
Helix 183	AU3	G	81	87	Right-handed alpha
Helix 184	AU4	G	102	112	Right-handed 310
Helix 185	AU5	G	130	139	Right-handed alpha
Helix 186	AU6	X	205	215	Right-handed alpha
Helix 187	AU7	X	222	233	Right-handed alpha
Helix 188	AU8	X	237	246	Right-handed alpha
Helix 189	AU9	X	266	271	Right-handed 310
Helix 190	AV1	X	301	313	Right-handed alpha
Helix 191	AV2	X	313	319	Right-handed alpha
Helix 192	AV3	X	332	349	Right-handed alpha
Helix 193	AV4	X	360	366	Right-handed alpha
Helix 194	AV5	X	376	383	Right-handed alpha
Helix 195	AV6	X	400	411	Right-handed alpha
Helix 196	AV7	X	429	447	Right-handed alpha
Helix 197	AV8	X	449	472	Right-handed alpha
Helix 198	AV9	X	529	533	Right-handed 310
Helix 199	AW1	X	563	572	Right-handed alpha
Helix 200	AW2	X	574	595	Right-handed alpha
Helix 201	AW3	X	599	605	Right-handed alpha
Helix 202	AW4	X	629	646	Right-handed alpha
Helix 203	AW5	X	648	670	Right-handed alpha
Helix 204	AW6	X	679	688	Right-handed alpha
Helix 205	AW7	X	693	716	Right-handed alpha
Helix 206	AW8	Y	5	10	Right-handed 310
Helix 207	AW9	Y	17	22	Right-handed alpha
Helix 208	AX1	Y	35	49	Right-handed alpha
Helix 209	AX2	Y	84	99	Right-handed alpha
Helix 210	AX3	Y	101	117	Right-handed alpha
Helix 211	AX4	Y	118	124	Right-handed 310
Helix 212	AX5	Y	138	153	Right-handed alpha
Helix 213	AX6	Y	162	174	Right-handed alpha
Helix 214	AX7	Y	214	222	Right-handed alpha
Helix 215	AX8	Y	245	265	Right-handed alpha
Helix 216	AX9	Y	276	293	Right-handed alpha
Helix 217	AY1	Y	308	313	Right-handed alpha
Helix 218	AY2	Y	314	326	Right-handed alpha
Helix 219	AY3	Y	330	338	Right-handed alpha
Helix 220	AY4	Y	338	346	Right-handed alpha
Helix 221	AY5	Y	369	373	Right-handed 310
Helix 222	AY6	Y	377	381	Right-handed 310
Helix 223	AY7	Y	382	393	Right-handed alpha
Helix 224	AY8	Y	394	396	Right-handed 310
Helix 225	AY9	Y	413	426	Right-handed alpha
Helix 226	AZ1	Y	454	472	Right-handed alpha
Helix 227	AZ2	Y	517	536	Right-handed alpha
Helix 228	AZ3	Y	539	559	Right-handed alpha
Helix 229	AZ4	Y	569	582	Right-handed alpha
Helix 230	AZ5	Y	584	588	Right-handed 310
Helix 231	AZ6	Y	589	593	Right-handed 310
Helix 232	AZ7	Y	599	603	Right-handed 310
Helix 233	AZ8	Y	606	611	Right-handed alpha
Helix 234	AZ9	Y	616	624	Right-handed alpha
Helix 235	BA1	Y	661	665	Right-handed 310
Helix 236	BA2	Z	44	54	Right-handed alpha
Helix 237	BA3	Z	64	69	Right-handed alpha
Helix 238	BA4	Z	94	104	Right-handed alpha
Helix 239	BA5	Z	112	117	Right-handed alpha
Helix 240	BA6	Z	117	129	Right-handed alpha
Helix 241	BA7	Z	227	234	Right-handed alpha
Helix 242	BA8	Z	235	237	Right-handed 310

There are 65 sheets in PDB entry 8RNA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	60	62	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	110	112	anti-parallel
Strand 3	A	117	124	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	154	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	303	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	442	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	513	522	anti-parallel
Strand 4	A	550	563	anti-parallel
Strand 5	A	537	538	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	477	487	anti-parallel
Strand 3	A	492	502	anti-parallel
Strand 4	A	513	522	anti-parallel
Strand 5	A	550	563	anti-parallel
Strand 6	A	542	545	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	367	parallel
Strand 3	B	356	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	628	first strand
Strand 2	A	614	620	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	188	first strand
Strand 2	B	203	213	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel
Strand 3	B	500	502	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	654	655	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	91	93	anti-parallel
Strand 3	C	80	81	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	243	247	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	148	first strand
Strand 2	C	217	222	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	530	531	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	330	336	anti-parallel
Strand 3	C	363	369	anti-parallel
Strand 4	C	372	379	anti-parallel
Strand 5	C	382	388	anti-parallel
Strand 6	C	479	481	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	347	first strand
Strand 2	C	353	360	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	505	506	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	649	651	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	662	first strand
Strand 2	C	667	670	anti-parallel
Strand 3	C	674	676	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	700	first strand
Strand 2	C	735	740	anti-parallel
Strand 3	C	725	729	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	79	first strand
Strand 2	D	110	112	anti-parallel
Strand 3	D	117	124	anti-parallel
Strand 4	D	144	149	parallel
Strand 5	D	153	156	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	256	first strand
Strand 2	D	675	676	anti-parallel
Strand 3	E	482	485	anti-parallel
Strand 4	E	298	302	anti-parallel
Strand 5	E	445	452	anti-parallel
Strand 6	E	435	442	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	295	first strand
Strand 2	D	492	502	anti-parallel
Strand 3	D	477	487	anti-parallel
Strand 4	D	416	417	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	295	first strand
Strand 2	D	492	502	anti-parallel
Strand 3	D	514	522	anti-parallel
Strand 4	D	550	562	anti-parallel
Strand 5	D	537	545	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	E	364	369	parallel
Strand 3	E	354	359	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	628	first strand
Strand 2	D	614	620	anti-parallel
Strand 3	E	2	3	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	57	first strand
Strand 2	E	64	67	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	135	137	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	188	first strand
Strand 2	E	203	213	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	244	first strand
Strand 2	E	223	225	anti-parallel
Strand 3	E	348	350	parallel
Strand 4	E	401	403	anti-parallel
Strand 5	E	396	397	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	488	490	first strand
Strand 2	E	494	497	anti-parallel
Strand 3	E	500	503	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	92	93	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	77	78	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	132	first strand
Strand 2	F	523	524	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	137	first strand
Strand 2	F	242	244	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	295	first strand
Strand 2	F	289	291	anti-parallel
Strand 3	F	531	532	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	326	first strand
Strand 2	F	331	332	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	337	first strand
Strand 2	F	363	365	anti-parallel
Strand 3	F	372	378	anti-parallel
Strand 4	F	368	369	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	337	first strand
Strand 2	F	363	365	anti-parallel
Strand 3	F	372	378	anti-parallel
Strand 4	F	383	388	anti-parallel
Strand 5	F	479	481	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	347	first strand
Strand 2	F	353	360	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	455	first strand
Strand 2	F	474	476	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	498	499	first strand
Strand 2	F	505	506	anti-parallel
Strand 3	F	512	514	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	639	641	first strand
Strand 2	F	649	651	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	660	662	first strand
Strand 2	F	667	670	anti-parallel
Strand 3	F	673	676	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	698	702	first strand
Strand 2	F	735	740	anti-parallel
Strand 3	F	725	729	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	25	first strand
Strand 2	G	49	50	parallel
Strand 3	G	68	72	parallel
Strand 4	G	92	94	parallel
Strand 5	G	117	119	parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	255	256	first strand
Strand 2	X	675	676	anti-parallel
Strand 3	Y	482	485	anti-parallel
Strand 4	Y	298	303	anti-parallel
Strand 5	Y	445	452	anti-parallel
Strand 6	Y	435	442	anti-parallel

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There are 6 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	291	295	first strand
Strand 2	X	492	503	anti-parallel
Strand 3	X	514	522	anti-parallel
Strand 4	X	550	562	anti-parallel
Strand 5	X	537	545	anti-parallel
Strand 6	X	323	326	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	291	295	first strand
Strand 2	X	492	503	anti-parallel
Strand 3	X	476	487	anti-parallel
Strand 4	X	416	417	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	373	374	first strand
Strand 2	Y	364	368	parallel
Strand 3	Y	355	359	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	623	628	first strand
Strand 2	X	614	620	anti-parallel
Strand 3	Y	2	3	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	54	57	first strand
Strand 2	Y	64	67	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	128	130	first strand
Strand 2	Y	135	137	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	178	188	first strand
Strand 2	Y	203	213	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	240	244	first strand
Strand 2	Y	223	228	anti-parallel
Strand 3	Y	348	350	parallel
Strand 4	Y	401	403	anti-parallel

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There are 3 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	488	491	first strand
Strand 2	Y	494	497	anti-parallel
Strand 3	Y	500	501	anti-parallel

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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	641	642	first strand
Strand 2	Y	654	655	anti-parallel

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There are 3 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	59	60	first strand
Strand 2	Z	92	93	anti-parallel
Strand 3	Z	80	81	anti-parallel

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There are 2 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	73	74	first strand
Strand 2	Z	77	78	anti-parallel

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There are 2 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	131	136	first strand
Strand 2	Z	243	247	anti-parallel

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There are 2 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	143	147	first strand
Strand 2	Z	218	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RNA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RNA