Analysis of interatomic Contacts of Structural Units in PDB entry:
8RNB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RNB entry

There are 5 chains in PDB entry 8RNB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	VAL 716
E	MET 1	ILE 752
F	MET 1	ARG 743
G	MET 1	ALA 155
C	GLY 541	LYS 678

There are101 helices in PDB entry 8RNB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	1	9	Right-handed alpha
Helix 2	AA2	D	10	22	Right-handed alpha
Helix 3	AA3	D	23	25	Right-handed 310
Helix 4	AA4	D	32	49	Right-handed alpha
Helix 5	AA5	D	84	100	Right-handed alpha
Helix 6	AA6	D	127	140	Right-handed alpha
Helix 7	AA7	D	163	182	Right-handed alpha
Helix 8	AA8	D	183	185	Right-handed 310
Helix 9	AA9	D	193	198	Right-handed 310
Helix 10	AB1	D	205	214	Right-handed alpha
Helix 11	AB2	D	222	233	Right-handed alpha
Helix 12	AB3	D	237	246	Right-handed alpha
Helix 13	AB4	D	258	262	Right-handed 310
Helix 14	AB5	D	266	271	Right-handed 310
Helix 15	AB6	D	301	313	Right-handed alpha
Helix 16	AB7	D	313	318	Right-handed alpha
Helix 17	AB8	D	332	349	Right-handed alpha
Helix 18	AB9	D	358	366	Right-handed alpha
Helix 19	AC1	D	376	383	Right-handed alpha
Helix 20	AC2	D	400	411	Right-handed alpha
Helix 21	AC3	D	429	447	Right-handed alpha
Helix 22	AC4	D	449	469	Right-handed alpha
Helix 23	AC5	D	525	533	Right-handed 310
Helix 24	AC6	D	563	573	Right-handed alpha
Helix 25	AC7	D	575	595	Right-handed alpha
Helix 26	AC8	D	599	605	Right-handed alpha
Helix 27	AC9	D	629	646	Right-handed alpha
Helix 28	AD1	D	648	670	Right-handed alpha
Helix 29	AD2	D	678	688	Right-handed alpha
Helix 30	AD3	D	693	715	Right-handed alpha
Helix 31	AD4	E	7	12	Right-handed alpha
Helix 32	AD5	E	13	18	Right-handed alpha
Helix 33	AD6	E	35	49	Right-handed alpha
Helix 34	AD7	E	84	99	Right-handed alpha
Helix 35	AD8	E	101	117	Right-handed alpha
Helix 36	AD9	E	118	124	Right-handed 310
Helix 37	AE1	E	138	153	Right-handed alpha
Helix 38	AE2	E	156	161	Right-handed alpha
Helix 39	AE3	E	162	174	Right-handed alpha
Helix 40	AE4	E	214	222	Right-handed alpha
Helix 41	AE5	E	248	265	Right-handed alpha
Helix 42	AE6	E	275	292	Right-handed alpha
Helix 43	AE7	E	314	326	Right-handed alpha
Helix 44	AE8	E	330	346	Right-handed alpha
Helix 45	AE9	E	371	373	Right-handed 310
Helix 46	AF1	E	377	381	Right-handed 310
Helix 47	AF2	E	382	393	Right-handed alpha
Helix 48	AF3	E	413	426	Right-handed alpha
Helix 49	AF4	E	454	472	Right-handed alpha
Helix 50	AF5	E	477	480	Right-handed 310
Helix 51	AF6	E	517	536	Right-handed alpha
Helix 52	AF7	E	539	559	Right-handed alpha
Helix 53	AF8	E	569	582	Right-handed alpha
Helix 54	AF9	E	589	593	Right-handed 310
Helix 55	AG1	E	599	603	Right-handed 310
Helix 56	AG2	E	606	612	Right-handed alpha
Helix 57	AG3	E	613	615	Right-handed 310
Helix 58	AG4	E	616	624	Right-handed alpha
Helix 59	AG5	E	675	684	Right-handed alpha
Helix 60	AG6	E	687	702	Right-handed alpha
Helix 61	AG7	E	712	732	Right-handed alpha
Helix 62	AG8	E	735	750	Right-handed alpha
Helix 63	AG9	F	2	15	Right-handed alpha
Helix 64	AH1	F	15	25	Right-handed alpha
Helix 65	AH2	F	26	39	Right-handed alpha
Helix 66	AH3	F	44	55	Right-handed alpha
Helix 67	AH4	F	64	70	Right-handed alpha
Helix 68	AH5	F	94	105	Right-handed alpha
Helix 69	AH6	F	112	117	Right-handed alpha
Helix 70	AH7	F	117	129	Right-handed alpha
Helix 71	AH8	F	228	232	Right-handed alpha
Helix 72	AH9	F	233	237	Right-handed 310
Helix 73	AI1	F	255	275	Right-handed alpha
Helix 74	AI2	F	277	288	Right-handed alpha
Helix 75	AI3	F	296	303	Right-handed alpha
Helix 76	AI4	F	308	318	Right-handed alpha
Helix 77	AI5	F	392	408	Right-handed alpha
Helix 78	AI6	F	409	415	Right-handed alpha
Helix 79	AI7	F	431	443	Right-handed alpha
Helix 80	AI8	F	444	452	Right-handed alpha
Helix 81	AI9	F	534	541	Right-handed 310
Helix 82	AJ1	F	542	557	Right-handed alpha
Helix 83	AJ2	F	557	568	Right-handed alpha
Helix 84	AJ3	F	570	574	Right-handed 310
Helix 85	AJ4	F	575	583	Right-handed alpha
Helix 86	AJ5	F	586	607	Right-handed alpha
Helix 87	AJ6	F	611	619	Right-handed alpha
Helix 88	AJ7	F	620	623	Right-handed 310
Helix 89	AJ8	F	682	686	Right-handed 310
Helix 90	AJ9	F	705	709	Right-handed 310
Helix 91	AK1	F	713	719	Right-handed alpha
Helix 92	AK2	G	2	12	Right-handed alpha
Helix 93	AK3	G	81	87	Right-handed alpha
Helix 94	AK4	G	102	112	Right-handed 310
Helix 95	AK5	G	130	139	Right-handed alpha
Helix 96	AK6	C	542	557	Right-handed alpha
Helix 97	AK7	C	557	568	Right-handed alpha
Helix 98	AK8	C	577	584	Right-handed alpha
Helix 99	AK9	C	586	608	Right-handed alpha
Helix 100	AL1	C	611	619	Right-handed alpha
Helix 101	AL2	C	620	623	Right-handed 310

There are 28 sheets in PDB entry 8RNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	79	first strand
Strand 2	D	110	112	anti-parallel
Strand 3	D	117	124	anti-parallel
Strand 4	D	144	149	parallel
Strand 5	D	153	156	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	256	first strand
Strand 2	D	675	676	anti-parallel
Strand 3	E	482	485	anti-parallel
Strand 4	E	298	302	anti-parallel
Strand 5	E	445	452	anti-parallel
Strand 6	E	435	442	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	295	first strand
Strand 2	D	492	502	anti-parallel
Strand 3	D	477	487	anti-parallel
Strand 4	D	416	417	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	295	first strand
Strand 2	D	492	502	anti-parallel
Strand 3	D	514	522	anti-parallel
Strand 4	D	550	562	anti-parallel
Strand 5	D	537	545	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	374	first strand
Strand 2	E	364	369	parallel
Strand 3	E	354	359	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	628	first strand
Strand 2	D	614	620	anti-parallel
Strand 3	E	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	57	first strand
Strand 2	E	64	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	130	first strand
Strand 2	E	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	188	first strand
Strand 2	E	203	213	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	244	first strand
Strand 2	E	223	225	anti-parallel
Strand 3	E	348	350	parallel
Strand 4	E	401	403	anti-parallel
Strand 5	E	396	397	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	488	490	first strand
Strand 2	E	494	497	anti-parallel
Strand 3	E	500	503	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	92	93	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	77	78	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	132	first strand
Strand 2	F	523	524	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	137	first strand
Strand 2	F	242	244	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	295	first strand
Strand 2	F	289	291	anti-parallel
Strand 3	F	531	532	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	326	first strand
Strand 2	F	331	332	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	337	first strand
Strand 2	F	363	365	anti-parallel
Strand 3	F	372	378	anti-parallel
Strand 4	F	368	369	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	337	first strand
Strand 2	F	363	365	anti-parallel
Strand 3	F	372	378	anti-parallel
Strand 4	F	383	388	anti-parallel
Strand 5	F	479	481	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	347	first strand
Strand 2	F	353	360	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	453	455	first strand
Strand 2	F	474	476	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	498	499	first strand
Strand 2	F	505	506	anti-parallel
Strand 3	F	512	514	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	639	641	first strand
Strand 2	F	649	651	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	660	662	first strand
Strand 2	F	667	670	anti-parallel
Strand 3	F	673	676	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	698	702	first strand
Strand 2	F	735	740	anti-parallel
Strand 3	F	725	729	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	25	first strand
Strand 2	G	49	50	parallel
Strand 3	G	68	72	parallel
Strand 4	G	92	94	parallel
Strand 5	G	117	119	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	649	651	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	662	first strand
Strand 2	C	667	670	anti-parallel
Strand 3	C	674	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RNB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RNB