Analysis of interatomic Contacts of Structural Units in PDB entry:
8RNU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RNU entry

There are 12 chains in PDB entry 8RNU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	LEU 119
K	GLN 1	LEU 119
E	GLN 1	LEU 119
I	GLN 1	LEU 119
C	GLN 1	LEU 119
G	GLN 1	LEU 119
B	GLN 1	LEU 119
H	GLN 1	LEU 119
D	GLN 1	LEU 119
J	GLN 1	LEU 119
F	GLN 1	LEU 119
L	GLN 1	LEU 119

There are 42 helices in PDB entry 8RNU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	74	Right-handed alpha
Helix 2	AA2	A	104	111	Right-handed alpha
Helix 3	AA3	K	67	72	Right-handed 310
Helix 4	AA4	K	100	103	Right-handed 310
Helix 5	AA5	K	104	111	Right-handed alpha
Helix 6	AA6	E	67	72	Right-handed alpha
Helix 7	AA7	E	74	78	Right-handed 310
Helix 8	AA8	E	104	111	Right-handed alpha
Helix 9	AA9	I	67	71	Right-handed 310
Helix 10	AB1	I	74	78	Right-handed 310
Helix 11	AB2	I	100	103	Right-handed 310
Helix 12	AB3	I	104	111	Right-handed alpha
Helix 13	AB4	C	67	74	Right-handed alpha
Helix 14	AB5	C	75	78	Right-handed 310
Helix 15	AB6	C	104	111	Right-handed alpha
Helix 16	AB7	G	37	39	Right-handed 310
Helix 17	AB8	G	67	72	Right-handed 310
Helix 18	AB9	G	100	103	Right-handed 310
Helix 19	AC1	G	104	111	Right-handed alpha
Helix 20	AC2	B	67	72	Right-handed alpha
Helix 21	AC3	B	74	78	Right-handed 310
Helix 22	AC4	B	104	111	Right-handed alpha
Helix 23	AC5	H	67	71	Right-handed 310
Helix 24	AC6	H	73	78	Right-handed alpha
Helix 25	AC7	H	100	103	Right-handed 310
Helix 26	AC8	H	104	111	Right-handed alpha
Helix 27	AC9	D	67	74	Right-handed alpha
Helix 28	AD1	D	75	78	Right-handed 310
Helix 29	AD2	D	100	103	Right-handed 310
Helix 30	AD3	D	104	111	Right-handed alpha
Helix 31	AD4	J	67	71	Right-handed 310
Helix 32	AD5	J	73	78	Right-handed alpha
Helix 33	AD6	J	100	103	Right-handed 310
Helix 34	AD7	J	104	111	Right-handed alpha
Helix 35	AD8	F	67	72	Right-handed alpha
Helix 36	AD9	F	74	78	Right-handed 310
Helix 37	AE1	F	100	103	Right-handed 310
Helix 38	AE2	F	104	112	Right-handed alpha
Helix 39	AE3	L	37	39	Right-handed 310
Helix 40	AE4	L	67	71	Right-handed 310
Helix 41	AE5	L	100	103	Right-handed 310
Helix 42	AE6	L	104	111	Right-handed alpha

There are 16 sheets in PDB entry 8RNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	15	20	anti-parallel
Strand 3	A	31	36	anti-parallel
Strand 4	A	41	44	anti-parallel
Strand 5	A	52	56	anti-parallel
Strand 6	B	116	118	parallel
Strand 7	B	95	96	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	115	118	anti-parallel
Strand 3	B	51	56	parallel
Strand 4	B	41	46	anti-parallel
Strand 5	B	31	36	anti-parallel
Strand 6	B	15	20	anti-parallel
Strand 7	B	8	10	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	9	first strand
Strand 2	K	16	19	anti-parallel
Strand 3	K	32	36	anti-parallel
Strand 4	K	41	46	anti-parallel
Strand 5	K	51	56	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	95	97	first strand
Strand 2	K	116	118	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	10	first strand
Strand 2	E	15	20	anti-parallel
Strand 3	E	31	36	anti-parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	52	56	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	E	115	118	anti-parallel
Strand 3	F	51	56	parallel
Strand 4	F	41	46	anti-parallel
Strand 5	F	31	36	anti-parallel
Strand 6	F	15	20	anti-parallel
Strand 7	F	6	10	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	19	first strand
Strand 2	I	32	36	anti-parallel
Strand 3	I	41	46	anti-parallel
Strand 4	I	51	56	anti-parallel
Strand 5	J	115	118	parallel
Strand 6	J	95	97	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	95	96	first strand
Strand 2	I	115	118	anti-parallel
Strand 3	J	51	56	parallel
Strand 4	J	41	46	anti-parallel
Strand 5	J	34	36	anti-parallel
Strand 6	J	16	17	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	15	20	anti-parallel
Strand 3	C	31	36	anti-parallel
Strand 4	C	41	43	anti-parallel
Strand 5	C	51	56	anti-parallel
Strand 6	D	115	118	parallel
Strand 7	D	95	96	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	15	20	anti-parallel
Strand 3	C	31	36	anti-parallel
Strand 4	C	45	46	anti-parallel
Strand 5	C	51	56	anti-parallel
Strand 6	D	115	118	parallel
Strand 7	D	95	96	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	117	118	anti-parallel
Strand 3	D	53	56	parallel
Strand 4	D	41	46	anti-parallel
Strand 5	D	31	36	anti-parallel
Strand 6	D	15	20	anti-parallel
Strand 7	D	6	10	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	9	first strand
Strand 2	G	16	19	anti-parallel
Strand 3	G	31	36	anti-parallel
Strand 4	G	41	46	anti-parallel
Strand 5	G	51	56	anti-parallel
Strand 6	H	115	118	parallel
Strand 7	H	95	96	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	97	first strand
Strand 2	G	115	118	anti-parallel
Strand 3	H	51	56	parallel
Strand 4	H	41	46	anti-parallel
Strand 5	H	32	36	anti-parallel
Strand 6	H	15	19	anti-parallel
Strand 7	H	8	9	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	96	first strand
Strand 2	F	117	118	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	16	19	first strand
Strand 2	L	32	36	anti-parallel
Strand 3	L	41	46	anti-parallel
Strand 4	L	51	56	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	95	97	first strand
Strand 2	L	116	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RNU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RNU