Analysis of interatomic Contacts of Structural Units in PDB entry:
8RO4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RO4 entry

There are 6 chains in PDB entry 8RO4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 349
C	MET 1	GLY 348
D	MET 1	LEU 349
B	MET 1	LEU 349
E	MET 1	LEU 349
F	MET 1	LEU 349

There are104 helices in PDB entry 8RO4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	15	Right-handed 310
Helix 2	AA2	A	23	34	Right-handed alpha
Helix 3	AA3	A	49	56	Right-handed alpha
Helix 4	AA4	A	56	70	Right-handed alpha
Helix 5	AA5	A	80	86	Right-handed alpha
Helix 6	AA6	A	89	93	Right-handed 310
Helix 7	AA7	A	96	100	Right-handed 310
Helix 8	AA8	A	101	105	Right-handed 310
Helix 9	AA9	A	107	130	Right-handed alpha
Helix 10	AB1	A	142	146	Right-handed 310
Helix 11	AB2	A	155	179	Right-handed alpha
Helix 12	AB3	A	194	205	Right-handed alpha
Helix 13	AB4	A	216	222	Right-handed alpha
Helix 14	AB5	A	226	235	Right-handed alpha
Helix 15	AB6	A	279	290	Right-handed alpha
Helix 16	AB7	A	306	322	Right-handed alpha
Helix 17	AB8	A	339	347	Right-handed alpha
Helix 18	AB9	C	12	15	Right-handed 310
Helix 19	AC1	C	23	35	Right-handed alpha
Helix 20	AC2	C	49	56	Right-handed alpha
Helix 21	AC3	C	56	71	Right-handed alpha
Helix 22	AC4	C	80	86	Right-handed alpha
Helix 23	AC5	C	89	93	Right-handed 310
Helix 24	AC6	C	96	100	Right-handed 310
Helix 25	AC7	C	101	105	Right-handed 310
Helix 26	AC8	C	107	130	Right-handed alpha
Helix 27	AC9	C	142	146	Right-handed 310
Helix 28	AD1	C	155	179	Right-handed alpha
Helix 29	AD2	C	194	205	Right-handed alpha
Helix 30	AD3	C	216	222	Right-handed alpha
Helix 31	AD4	C	226	235	Right-handed alpha
Helix 32	AD5	C	279	290	Right-handed alpha
Helix 33	AD6	C	306	322	Right-handed alpha
Helix 34	AD7	C	339	347	Right-handed alpha
Helix 35	AD8	D	12	14	Right-handed 310
Helix 36	AD9	D	23	34	Right-handed alpha
Helix 37	AE1	D	49	54	Right-handed alpha
Helix 38	AE2	D	56	71	Right-handed alpha
Helix 39	AE3	D	80	85	Right-handed alpha
Helix 40	AE4	D	89	93	Right-handed 310
Helix 41	AE5	D	96	100	Right-handed 310
Helix 42	AE6	D	101	105	Right-handed 310
Helix 43	AE7	D	107	130	Right-handed alpha
Helix 44	AE8	D	142	146	Right-handed 310
Helix 45	AE9	D	155	179	Right-handed alpha
Helix 46	AF1	D	194	205	Right-handed alpha
Helix 47	AF2	D	216	222	Right-handed alpha
Helix 48	AF3	D	226	235	Right-handed alpha
Helix 49	AF4	D	279	290	Right-handed alpha
Helix 50	AF5	D	306	322	Right-handed alpha
Helix 51	AF6	D	339	347	Right-handed alpha
Helix 52	AF7	B	12	15	Right-handed 310
Helix 53	AF8	B	23	34	Right-handed alpha
Helix 54	AF9	B	49	56	Right-handed alpha
Helix 55	AG1	B	56	71	Right-handed alpha
Helix 56	AG2	B	80	85	Right-handed alpha
Helix 57	AG3	B	89	91	Right-handed 310
Helix 58	AG4	B	92	98	Right-handed alpha
Helix 59	AG5	B	99	100	Right-handed 310
Helix 60	AG6	B	101	105	Right-handed 310
Helix 61	AG7	B	107	130	Right-handed alpha
Helix 62	AG8	B	142	146	Right-handed 310
Helix 63	AG9	B	155	179	Right-handed alpha
Helix 64	AH1	B	194	205	Right-handed alpha
Helix 65	AH2	B	216	222	Right-handed alpha
Helix 66	AH3	B	226	235	Right-handed alpha
Helix 67	AH4	B	279	290	Right-handed alpha
Helix 68	AH5	B	306	322	Right-handed alpha
Helix 69	AH6	B	340	347	Right-handed alpha
Helix 70	AH7	E	12	14	Right-handed 310
Helix 71	AH8	E	23	35	Right-handed alpha
Helix 72	AH9	E	49	56	Right-handed alpha
Helix 73	AI1	E	56	70	Right-handed alpha
Helix 74	AI2	E	80	86	Right-handed alpha
Helix 75	AI3	E	89	93	Right-handed 310
Helix 76	AI4	E	96	100	Right-handed 310
Helix 77	AI5	E	101	105	Right-handed 310
Helix 78	AI6	E	107	130	Right-handed alpha
Helix 79	AI7	E	142	146	Right-handed 310
Helix 80	AI8	E	155	179	Right-handed alpha
Helix 81	AI9	E	194	205	Right-handed alpha
Helix 82	AJ1	E	216	222	Right-handed alpha
Helix 83	AJ2	E	226	235	Right-handed alpha
Helix 84	AJ3	E	279	290	Right-handed alpha
Helix 85	AJ4	E	306	322	Right-handed alpha
Helix 86	AJ5	E	339	348	Right-handed alpha
Helix 87	AJ6	F	12	14	Right-handed 310
Helix 88	AJ7	F	23	34	Right-handed alpha
Helix 89	AJ8	F	49	56	Right-handed alpha
Helix 90	AJ9	F	56	69	Right-handed alpha
Helix 91	AK1	F	80	86	Right-handed alpha
Helix 92	AK2	F	89	91	Right-handed 310
Helix 93	AK3	F	92	97	Right-handed alpha
Helix 94	AK4	F	98	100	Right-handed 310
Helix 95	AK5	F	101	105	Right-handed 310
Helix 96	AK6	F	107	130	Right-handed alpha
Helix 97	AK7	F	142	146	Right-handed 310
Helix 98	AK8	F	155	179	Right-handed alpha
Helix 99	AK9	F	194	205	Right-handed alpha
Helix 100	AL1	F	216	222	Right-handed alpha
Helix 101	AL2	F	226	235	Right-handed alpha
Helix 102	AL3	F	279	290	Right-handed alpha
Helix 103	AL4	F	306	322	Right-handed alpha
Helix 104	AL5	F	339	347	Right-handed alpha

There are 12 sheets in PDB entry 8RO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	38	42	parallel
Strand 3	A	73	79	parallel
Strand 4	A	133	136	parallel
Strand 5	A	181	185	parallel
Strand 6	A	211	215	parallel
Strand 7	A	238	243	parallel
Strand 8	A	295	298	parallel
Strand 9	A	5	10	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	248	first strand
Strand 2	A	268	271	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	38	42	parallel
Strand 3	C	73	79	parallel
Strand 4	C	133	136	parallel
Strand 5	C	181	185	parallel
Strand 6	C	211	215	parallel
Strand 7	C	238	243	parallel
Strand 8	C	295	298	parallel
Strand 9	C	5	10	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	248	first strand
Strand 2	C	268	271	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	38	42	parallel
Strand 3	D	73	79	parallel
Strand 4	D	133	136	parallel
Strand 5	D	181	185	parallel
Strand 6	D	211	215	parallel
Strand 7	D	238	243	parallel
Strand 8	D	295	298	parallel
Strand 9	D	5	10	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	248	first strand
Strand 2	D	268	271	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	38	42	parallel
Strand 3	B	73	79	parallel
Strand 4	B	133	136	parallel
Strand 5	B	181	185	parallel
Strand 6	B	211	215	parallel
Strand 7	B	238	243	parallel
Strand 8	B	295	298	parallel
Strand 9	B	5	10	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	248	first strand
Strand 2	B	268	271	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	10	first strand
Strand 2	E	38	42	parallel
Strand 3	E	73	79	parallel
Strand 4	E	133	136	parallel
Strand 5	E	181	185	parallel
Strand 6	E	211	215	parallel
Strand 7	E	238	243	parallel
Strand 8	E	295	298	parallel
Strand 9	E	5	10	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	248	first strand
Strand 2	E	268	271	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	10	first strand
Strand 2	F	38	42	parallel
Strand 3	F	73	79	parallel
Strand 4	F	133	136	parallel
Strand 5	F	181	185	parallel
Strand 6	F	211	215	parallel
Strand 7	F	238	243	parallel
Strand 8	F	295	298	parallel
Strand 9	F	5	10	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	248	first strand
Strand 2	F	268	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RO4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RO4