Analysis of interatomic Contacts of Structural Units in PDB entry:
8ROA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ROA entry

There are 4 chains in PDB entry 8ROA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ASP 1225
B
 ALA 576PHE 636
C
 GLY 2ASP 1225
D
 MET 563GLY 630
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8ROA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 49Right-handed alpha
Helix 2
AA2
A
52 57Right-handed 310
Helix 3
AA3
A
60 65Right-handed 310
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
113 124Right-handed alpha
Helix 6
AA6
A
138 145Right-handed alpha
Helix 7
AA7
A
147 160Right-handed alpha
Helix 8
AA8
A
163 171Right-handed alpha
Helix 9
AA9
A
1059 1090Right-handed alpha
Helix 10
AB1
A
1105 1109Right-handed 310
Helix 11
AB2
A
1126 1128Right-handed 310
Helix 12
AB3
A
1129 1146Right-handed alpha
Helix 13
AB4
A
1166 1179Right-handed alpha
Helix 14
AB5
A
1190 1195Right-handed alpha
Helix 15
AB6
A
1221 1223Right-handed 310
Helix 16
AB7
B
581 585Right-handed alpha
Helix 17
AB8
B
589 606Right-handed alpha
Helix 18
AB9
B
631 636Right-handed alpha
Helix 19
AC1
C
37 49Right-handed alpha
Helix 20
AC2
C
52 57Right-handed 310
Helix 21
AC3
C
60 65Right-handed 310
Helix 22
AC4
C
67 71Right-handed 310
Helix 23
AC5
C
113 123Right-handed alpha
Helix 24
AC6
C
138 145Right-handed alpha
Helix 25
AC7
C
147 160Right-handed alpha
Helix 26
AC8
C
161 163Right-handed 310
Helix 27
AC9
C
164 182Right-handed alpha
Helix 28
AD1
C
1046 1090Right-handed alpha
Helix 29
AD2
C
1105 1109Right-handed 310
Helix 30
AD3
C
1126 1128Right-handed 310
Helix 31
AD4
C
1129 1146Right-handed alpha
Helix 32
AD5
C
1158 1161Right-handed 310
Helix 33
AD6
C
1166 1179Right-handed alpha
Helix 34
AD7
C
1190 1195Right-handed alpha
Helix 35
AD8
D
564 571Right-handed alpha
Helix 36
AD9
D
581 585Right-handed alpha
Helix 37
AE1
D
589 606Right-handed alpha
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There are 8 sheets in PDB entry 8ROA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 21first strand
Strand 2
A
3 12anti-parallel
Strand 3
A
77 85anti-parallel
Strand 4
A
92 99anti-parallel
Strand 5
A
102 107anti-parallel
Strand 6
A
110 112anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
1152 1156parallel
Strand 3
A
1183 1187parallel
Strand 4
A
27 31parallel
Strand 5
A
1199 1207parallel
Strand 6
A
1211 1219anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1100first strand
Strand 2
A
1111 1116anti-parallel
Strand 3
A
1123 1124anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 580first strand
Strand 2
B
620 624anti-parallel
Strand 3
B
609 613anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 21first strand
Strand 2
C
3 12anti-parallel
Strand 3
C
77 86anti-parallel
Strand 4
C
89 99anti-parallel
Strand 5
C
102 107anti-parallel
Strand 6
C
110 112anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
1152 1156parallel
Strand 3
C
1183 1187parallel
Strand 4
C
27 31parallel
Strand 5
C
1199 1207parallel
Strand 6
C
1211 1219anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1095 1100first strand
Strand 2
C
1111 1116anti-parallel
Strand 3
C
1123 1124anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
579 580first strand
Strand 2
D
620 624anti-parallel
Strand 3
D
609 613anti-parallel
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