Analysis of interatomic Contacts of Structural Units in PDB entry:
8ROC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ROC entry

There are 2 chains in PDB entry 8ROC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ASN 1227
B
 GLN 568GLN 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8ROC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 49Right-handed alpha
Helix 2
AA2
A
52 56Right-handed 310
Helix 3
AA3
A
60 65Right-handed 310
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
113 124Right-handed alpha
Helix 6
AA6
A
139 146Right-handed alpha
Helix 7
AA7
A
147 160Right-handed alpha
Helix 8
AA8
A
161 163Right-handed 310
Helix 9
AA9
A
164 175Right-handed alpha
Helix 10
AB1
A
1053 1090Right-handed alpha
Helix 11
AB2
A
1105 1109Right-handed 310
Helix 12
AB3
A
1129 1148Right-handed alpha
Helix 13
AB4
A
1163 1179Right-handed alpha
Helix 14
AB5
A
1190 1195Right-handed alpha
Helix 15
AB6
A
1221 1223Right-handed 310
Helix 16
AB7
B
581 585Right-handed alpha
Helix 17
AB8
B
589 606Right-handed alpha
Helix 18
AB9
B
631 636Right-handed alpha
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There are 4 sheets in PDB entry 8ROC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 21first strand
Strand 2
A
3 12anti-parallel
Strand 3
A
77 85anti-parallel
Strand 4
A
92 99anti-parallel
Strand 5
A
102 107anti-parallel
Strand 6
A
110 112anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
1152 1156parallel
Strand 3
A
1183 1187parallel
Strand 4
A
27 31parallel
Strand 5
A
1199 1206parallel
Strand 6
A
1212 1219anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1100first strand
Strand 2
A
1111 1116anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 580first strand
Strand 2
B
620 624anti-parallel
Strand 3
B
609 613anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il