Analysis of interatomic Contacts of Structural Units in PDB entry:
8ROI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ROI entry

There are 2 chains in PDB entry 8ROI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 1210
B
 GLY 12ARG 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8ROI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 50Right-handed alpha
Helix 2
AA2
A
51 54Right-handed 310
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
117 128Right-handed alpha
Helix 5
AA5
A
141 149Right-handed alpha
Helix 6
AA6
A
151 164Right-handed alpha
Helix 7
AA7
A
164 213Right-handed alpha
Helix 8
AA8
A
983 989Right-handed alpha
Helix 9
AA9
A
989 1048Right-handed alpha
Helix 10
AB1
A
1116 1135Right-handed alpha
Helix 11
AB2
A
1150 1165Right-handed alpha
Helix 12
AB3
A
1177 1183Right-handed 310
Helix 13
AB4
A
1202 1207Right-handed alpha
Helix 14
AB5
B
13 23Right-handed alpha
Helix 15
AB6
B
24 27Right-handed 310
Helix 16
AB7
B
28 35Right-handed alpha
Helix 17
AB8
B
36 46Right-handed alpha
Helix 18
AB9
B
52 90Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8ROI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
2 9anti-parallel
Strand 3
A
75 83anti-parallel
Strand 4
A
95 103anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
A
114 116anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
1139 1143parallel
Strand 3
A
1169 1173parallel
Strand 4
A
27 32parallel
Strand 5
A
1185 1192parallel
Strand 6
A
1195 1201anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1052 1057first strand
Strand 2
A
1096 1101anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il