Analysis of interatomic Contacts of Structural Units in PDB entry:
8ROK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ROK entry

There are 4 chains in PDB entry 8ROK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 1211
B
 GLY 12ILE 85
C
 MET 1ASP 1212
D
 ALA 4ALA 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8ROK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 50Right-handed alpha
Helix 2
AA2
A
51 54Right-handed 310
Helix 3
AA3
A
57 65Right-handed alpha
Helix 4
AA4
A
117 128Right-handed alpha
Helix 5
AA5
A
141 149Right-handed alpha
Helix 6
AA6
A
151 164Right-handed alpha
Helix 7
AA7
A
164 191Right-handed alpha
Helix 8
AA8
A
192 195Right-handed 310
Helix 9
AA9
A
994 1048Right-handed alpha
Helix 10
AB1
A
1113 1115Right-handed 310
Helix 11
AB2
A
1116 1133Right-handed alpha
Helix 12
AB3
A
1150 1165Right-handed alpha
Helix 13
AB4
A
1179 1183Right-handed 310
Helix 14
AB5
A
1202 1211Right-handed alpha
Helix 15
AB6
B
13 23Right-handed alpha
Helix 16
AB7
B
24 27Right-handed 310
Helix 17
AB8
B
28 35Right-handed alpha
Helix 18
AB9
B
36 46Right-handed alpha
Helix 19
AC1
B
52 80Right-handed alpha
Helix 20
AC2
C
37 50Right-handed alpha
Helix 21
AC3
C
51 54Right-handed 310
Helix 22
AC4
C
57 65Right-handed alpha
Helix 23
AC5
C
117 128Right-handed alpha
Helix 24
AC6
C
141 149Right-handed alpha
Helix 25
AC7
C
151 164Right-handed alpha
Helix 26
AC8
C
164 200Right-handed alpha
Helix 27
AC9
C
992 1024Right-handed alpha
Helix 28
AD1
C
1024 1048Right-handed alpha
Helix 29
AD2
C
1113 1115Right-handed 310
Helix 30
AD3
C
1116 1135Right-handed alpha
Helix 31
AD4
C
1150 1165Right-handed alpha
Helix 32
AD5
C
1178 1183Right-handed 310
Helix 33
AD6
C
1202 1212Right-handed alpha
Helix 34
AD7
D
11 23Right-handed alpha
Helix 35
AD8
D
28 35Right-handed alpha
Helix 36
AD9
D
36 46Right-handed alpha
Helix 37
AE1
D
52 87Right-handed alpha
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There are 6 sheets in PDB entry 8ROK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
2 9anti-parallel
Strand 3
A
75 83anti-parallel
Strand 4
A
95 103anti-parallel
Strand 5
A
107 111anti-parallel
Strand 6
A
114 116anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
1139 1143parallel
Strand 3
A
1169 1173parallel
Strand 4
A
27 31parallel
Strand 5
A
1185 1192parallel
Strand 6
A
1195 1201anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1052 1057first strand
Strand 2
A
1096 1101anti-parallel
Strand 3
A
1110 1111anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
2 9anti-parallel
Strand 3
C
75 83anti-parallel
Strand 4
C
95 103anti-parallel
Strand 5
C
107 111anti-parallel
Strand 6
C
114 116anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 140first strand
Strand 2
C
1139 1143parallel
Strand 3
C
1169 1173parallel
Strand 4
C
27 31parallel
Strand 5
C
1185 1192parallel
Strand 6
C
1195 1201anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1052 1058first strand
Strand 2
C
1095 1101anti-parallel
Strand 3
C
1110 1111anti-parallel
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