Analysis of interatomic Contacts of Structural Units in PDB entry:
8ROM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ROM entry

There is 1 chain in PDB entry 8ROM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 356SER 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8ROM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
361 371Right-handed alpha
Helix 2
AA2
A
374 394Right-handed alpha
Helix 3
AA3
A
406 424Right-handed alpha
Helix 4
AA4
A
442 457Right-handed alpha
Helix 5
AA5
A
466 478Right-handed alpha
Helix 6
AA6
A
492 497Right-handed alpha
Helix 7
AA7
A
521 532Right-handed alpha
Helix 8
AA8
A
537 542Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8ROM.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 464first strand
Strand 2
A
432 437parallel
Strand 3
A
399 402parallel
Strand 4
A
483 485parallel
Strand 5
A
512 514parallel
Strand 6
A
501 503anti-parallel
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