Analysis of interatomic Contacts of Structural Units in PDB entry:
8RON

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RON entry

There are 2 chains in PDB entry 8RON (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 110	ASN 578
B	SER 110	HIS 303

There are 82 helices in PDB entry 8RON. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	119	125	Right-handed alpha
Helix 2	AA2	A	130	142	Right-handed alpha
Helix 3	AA3	A	155	170	Right-handed alpha
Helix 4	AA4	A	186	195	Right-handed alpha
Helix 5	AA5	A	202	212	Right-handed alpha
Helix 6	AA6	A	217	220	Right-handed 310
Helix 7	AA7	A	257	269	Right-handed alpha
Helix 8	AA8	A	270	273	Right-handed 310
Helix 9	AA9	A	289	305	Right-handed alpha
Helix 10	AB1	A	332	346	Right-handed alpha
Helix 11	AB2	A	361	372	Right-handed alpha
Helix 12	AB3	A	374	394	Right-handed alpha
Helix 13	AB4	A	395	399	Right-handed 310
Helix 14	AB5	A	406	424	Right-handed alpha
Helix 15	AB6	A	442	457	Right-handed alpha
Helix 16	AB7	A	466	478	Right-handed alpha
Helix 17	AB8	A	521	532	Right-handed alpha
Helix 18	AB9	A	537	543	Right-handed 310
Helix 19	AC1	B	119	125	Right-handed alpha
Helix 20	AC2	B	130	143	Right-handed alpha
Helix 21	AC3	B	155	170	Right-handed alpha
Helix 22	AC4	B	186	195	Right-handed alpha
Helix 23	AC5	B	202	212	Right-handed alpha
Helix 24	AC6	B	217	220	Right-handed 310
Helix 25	AC7	B	257	269	Right-handed alpha
Helix 26	AC8	B	270	273	Right-handed 310
Helix 27	AC9	B	289	305	Right-handed alpha
Helix 28	AD1	B	332	346	Right-handed alpha
Helix 29	AD2	B	361	372	Right-handed alpha
Helix 30	AD3	B	374	394	Right-handed alpha
Helix 31	AD4	B	395	397	Right-handed 310
Helix 32	AD5	B	406	424	Right-handed alpha
Helix 33	AD6	B	442	456	Right-handed alpha
Helix 34	AD7	B	466	478	Right-handed alpha
Helix 35	AD8	B	492	498	Right-handed alpha
Helix 36	AD9	B	521	532	Right-handed alpha
Helix 37	AE1	B	537	542	Right-handed alpha
Helix 38	AE2	B	556	560	Right-handed 310
Helix 39	AE3	B	578	585	Right-handed alpha
Helix 40	AE4	C	119	125	Right-handed alpha
Helix 41	AE5	C	130	142	Right-handed alpha
Helix 42	AE6	C	155	170	Right-handed alpha
Helix 43	AE7	C	186	195	Right-handed alpha
Helix 44	AE8	C	202	212	Right-handed alpha
Helix 45	AE9	C	217	220	Right-handed 310
Helix 46	AF1	C	257	269	Right-handed alpha
Helix 47	AF2	C	270	273	Right-handed 310
Helix 48	AF3	C	289	305	Right-handed alpha
Helix 49	AF4	C	306	308	Right-handed 310
Helix 50	AF5	C	332	346	Right-handed alpha
Helix 51	AF6	C	358	372	Right-handed alpha
Helix 52	AF7	C	374	394	Right-handed alpha
Helix 53	AF8	C	395	397	Right-handed 310
Helix 54	AF9	C	406	424	Right-handed alpha
Helix 55	AG1	C	442	457	Right-handed alpha
Helix 56	AG2	C	466	478	Right-handed alpha
Helix 57	AG3	C	492	498	Right-handed alpha
Helix 58	AG4	C	521	532	Right-handed alpha
Helix 59	AG5	C	537	542	Right-handed alpha
Helix 60	AG6	C	572	576	Right-handed 310
Helix 61	AG7	D	119	125	Right-handed alpha
Helix 62	AG8	D	130	142	Right-handed alpha
Helix 63	AG9	D	155	170	Right-handed alpha
Helix 64	AH1	D	186	195	Right-handed alpha
Helix 65	AH2	D	202	212	Right-handed alpha
Helix 66	AH3	D	217	220	Right-handed 310
Helix 67	AH4	D	257	269	Right-handed alpha
Helix 68	AH5	D	270	273	Right-handed 310
Helix 69	AH6	D	289	305	Right-handed alpha
Helix 70	AH7	D	306	308	Right-handed 310
Helix 71	AH8	D	332	346	Right-handed alpha
Helix 72	AH9	D	361	372	Right-handed alpha
Helix 73	AI1	D	374	394	Right-handed alpha
Helix 74	AI2	D	395	397	Right-handed 310
Helix 75	AI3	D	406	424	Right-handed alpha
Helix 76	AI4	D	442	457	Right-handed alpha
Helix 77	AI5	D	466	478	Right-handed alpha
Helix 78	AI6	D	492	498	Right-handed alpha
Helix 79	AI7	D	521	532	Right-handed alpha
Helix 80	AI8	D	537	543	Right-handed 310
Helix 81	AI9	D	572	576	Right-handed 310
Helix 82	AJ1	D	579	583	Right-handed 310

There are 16 sheets in PDB entry 8RON. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	245	248	anti-parallel
Strand 3	A	251	254	anti-parallel
Strand 4	A	172	176	parallel
Strand 5	A	112	118	parallel
Strand 6	A	145	152	parallel
Strand 7	B	145	152	anti-parallel
Strand 8	B	112	118	parallel
Strand 9	B	172	176	parallel
Strand 10	B	251	254	parallel
Strand 11	B	245	248	anti-parallel
Strand 12	B	228	230	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	222	224	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	314	first strand
Strand 2	A	323	329	anti-parallel
Strand 3	A	280	286	anti-parallel
Strand 4	A	351	352	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	432	434	parallel
Strand 3	A	459	460	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	437	first strand
Strand 2	A	463	464	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	512	514	parallel
Strand 3	A	501	503	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	222	224	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	286	first strand
Strand 2	B	323	329	anti-parallel
Strand 3	B	309	314	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	464	first strand
Strand 2	B	432	437	parallel
Strand 3	B	399	402	parallel
Strand 4	B	483	485	parallel
Strand 5	B	512	514	parallel
Strand 6	B	501	503	anti-parallel

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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	230	first strand
Strand 2	C	245	248	anti-parallel
Strand 3	C	251	254	anti-parallel
Strand 4	C	172	176	parallel
Strand 5	C	111	118	parallel
Strand 6	C	144	152	parallel
Strand 7	D	145	152	anti-parallel
Strand 8	D	112	118	parallel
Strand 9	D	172	176	parallel
Strand 10	D	251	254	parallel
Strand 11	D	245	248	anti-parallel
Strand 12	D	228	230	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	222	224	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	314	first strand
Strand 2	C	323	329	anti-parallel
Strand 3	C	280	286	anti-parallel
Strand 4	C	351	352	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	460	first strand
Strand 2	C	432	434	parallel
Strand 3	C	399	402	parallel
Strand 4	C	483	485	parallel
Strand 5	C	512	514	parallel
Strand 6	C	501	503	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	222	224	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	314	first strand
Strand 2	D	323	329	anti-parallel
Strand 3	D	280	286	anti-parallel
Strand 4	D	351	352	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	459	462	first strand
Strand 2	D	432	435	parallel
Strand 3	D	399	402	parallel
Strand 4	D	483	485	parallel
Strand 5	D	512	514	parallel
Strand 6	D	501	503	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RON

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RON