Analysis of interatomic Contacts of Structural Units in PDB entry:
8ROR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ROR entry

There are 3 chains in PDB entry 8ROR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ASN 60	PHE 1516
L	VAL -1	CYS 216
H	GLU -5	CYS 216

There are 50 helices in PDB entry 8ROR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	112	124	Right-handed alpha
Helix 2	AA2	1	204	209	Right-handed alpha
Helix 3	AA3	1	210	214	Right-handed 310
Helix 4	AA4	1	250	254	Right-handed 310
Helix 5	AA5	1	328	333	Right-handed 310
Helix 6	AA6	1	358	364	Right-handed alpha
Helix 7	AA7	1	365	370	Right-handed alpha
Helix 8	AA8	1	395	401	Right-handed alpha
Helix 9	AA9	1	404	409	Right-handed 310
Helix 10	AB1	1	415	426	Right-handed alpha
Helix 11	AB2	1	438	442	Right-handed 310
Helix 12	AB3	1	462	466	Right-handed 310
Helix 13	AB4	1	483	490	Right-handed alpha
Helix 14	AB5	1	542	547	Right-handed alpha
Helix 15	AB6	1	550	554	Right-handed 310
Helix 16	AB7	1	611	619	Right-handed alpha
Helix 17	AB8	1	641	645	Right-handed 310
Helix 18	AB9	1	662	666	Right-handed 310
Helix 19	AC1	1	670	678	Right-handed alpha
Helix 20	AC2	1	678	683	Right-handed alpha
Helix 21	AC3	1	686	688	Right-handed 310
Helix 22	AC4	1	701	710	Right-handed alpha
Helix 23	AC5	1	739	746	Right-handed alpha
Helix 24	AC6	1	761	767	Right-handed alpha
Helix 25	AC7	1	779	785	Right-handed 310
Helix 26	AC8	1	797	808	Right-handed alpha
Helix 27	AC9	1	822	826	Right-handed 310
Helix 28	AD1	1	867	871	Right-handed 310
Helix 29	AD2	1	915	919	Right-handed alpha
Helix 30	AD3	1	988	1001	Right-handed alpha
Helix 31	AD4	1	1026	1033	Right-handed alpha
Helix 32	AD5	1	1034	1037	Right-handed 310
Helix 33	AD6	1	1049	1059	Right-handed alpha
Helix 34	AD7	1	1059	1067	Right-handed alpha
Helix 35	AD8	1	1146	1154	Right-handed alpha
Helix 36	AD9	1	1179	1192	Right-handed alpha
Helix 37	AE1	1	1220	1223	Right-handed 310
Helix 38	AE2	1	1237	1241	Right-handed 310
Helix 39	AE3	1	1249	1253	Right-handed 310
Helix 40	AE4	1	1255	1262	Right-handed alpha
Helix 41	AE5	1	1263	1275	Right-handed alpha
Helix 42	AE6	1	1302	1307	Right-handed alpha
Helix 43	AE7	1	1326	1338	Right-handed alpha
Helix 44	AE8	1	1418	1423	Right-handed alpha
Helix 45	AE9	1	1424	1427	Right-handed 310
Helix 46	AF1	1	1452	1454	Right-handed 310
Helix 47	AF2	L	123	129	Right-handed alpha
Helix 48	AF3	L	185	190	Right-handed alpha
Helix 49	AF4	H	55	60	Right-handed alpha
Helix 50	AF5	H	129	134	Right-handed alpha

There are 33 sheets in PDB entry 8ROR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	67	68	first strand
Strand 2	1	87	93	anti-parallel
Strand 3	1	78	81	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	67	68	first strand
Strand 2	1	87	93	anti-parallel
Strand 3	1	126	131	anti-parallel
Strand 4	1	137	141	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	161	162	first strand
Strand 2	1	166	167	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	184	190	first strand
Strand 2	1	197	203	anti-parallel
Strand 3	1	371	378	anti-parallel
Strand 4	1	386	388	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	184	190	first strand
Strand 2	1	197	203	anti-parallel
Strand 3	1	371	378	anti-parallel
Strand 4	1	393	394	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	245	246	first strand
Strand 2	1	315	316	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	257	259	first strand
Strand 2	1	285	293	anti-parallel
Strand 3	1	305	308	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	257	259	first strand
Strand 2	1	285	293	anti-parallel
Strand 3	1	690	693	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	319	320	first strand
Strand 2	1	323	324	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	494	497	first strand
Strand 2	1	500	503	anti-parallel
Strand 3	1	522	528	anti-parallel
Strand 4	1	535	541	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	574	582	first strand
Strand 2	1	585	592	anti-parallel
Strand 3	1	732	738	anti-parallel
Strand 4	1	787	791	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	595	596	first strand
Strand 2	1	725	726	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	862	864	first strand
Strand 2	1	891	893	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	913	914	first strand
Strand 2	1	967	968	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	949	953	first strand
Strand 2	1	940	944	anti-parallel
Strand 3	1	961	962	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1006	1008	first strand
Strand 2	1	1086	1092	anti-parallel
Strand 3	1	1214	1218	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1010	1011	first strand
Strand 2	1	1076	1077	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1107	1109	first strand
Strand 2	1	1112	1117	anti-parallel
Strand 3	1	1120	1124	anti-parallel
Strand 4	1	1138	1141	anti-parallel
Strand 5	1	1366	1368	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1162	1167	first strand
Strand 2	1	1173	1178	anti-parallel
Strand 3	1	1287	1291	anti-parallel
Strand 4	1	1374	1377	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1384	1386	first strand
Strand 2	1	1391	1393	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1408	1409	first strand
Strand 2	1	1445	1446	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1429	1430	first strand
Strand 2	1	1435	1436	anti-parallel
Strand 3	1	1456	1464	anti-parallel
Strand 4	1	1469	1479	anti-parallel
Strand 5	1	1496	1500	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	1429	1430	first strand
Strand 2	1	1435	1436	anti-parallel
Strand 3	1	1456	1464	anti-parallel
Strand 4	1	1469	1479	anti-parallel
Strand 5	1	1510	1513	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	4	first strand
Strand 2	L	16	21	anti-parallel
Strand 3	L	72	77	anti-parallel
Strand 4	L	64	69	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	10	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	92	anti-parallel
Strand 4	L	35	40	anti-parallel
Strand 5	L	46	51	anti-parallel
Strand 6	L	55	56	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	157	first strand
Strand 2	L	150	152	anti-parallel
Strand 3	L	193	196	anti-parallel
Strand 4	L	209	212	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	-3	0	first strand
Strand 2	H	16	19	anti-parallel
Strand 3	H	72	77	anti-parallel
Strand 4	H	12	13	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	-3	0	first strand
Strand 2	H	16	19	anti-parallel
Strand 3	H	72	77	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	108	111	parallel
Strand 3	H	86	94	anti-parallel
Strand 4	H	27	34	anti-parallel
Strand 5	H	39	46	anti-parallel
Strand 6	H	51	54	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	108	111	parallel
Strand 3	H	86	94	anti-parallel
Strand 4	H	99	104	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	125	first strand
Strand 2	H	136	146	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	170	171	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	155	first strand
Strand 2	H	195	199	anti-parallel
Strand 3	H	206	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ROR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ROR