Analysis of interatomic Contacts of Structural Units in PDB entry:
8ROT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ROT entry

There are 2 chains in PDB entry 8ROT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 95GLU 991
A
 GLN 95GLU 991
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 8ROT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
143 154Right-handed alpha
Helix 2
AA2
B
155 166Right-handed alpha
Helix 3
AA3
B
170 183Right-handed alpha
Helix 4
AA4
B
188 204Right-handed alpha
Helix 5
AA5
B
208 230Right-handed alpha
Helix 6
AA6
B
233 247Right-handed alpha
Helix 7
AA7
B
249 264Right-handed alpha
Helix 8
AA8
B
266 281Right-handed alpha
Helix 9
AA9
B
283 304Right-handed alpha
Helix 10
AB1
B
307 312Right-handed alpha
Helix 11
AB2
B
313 315Right-handed 310
Helix 12
AB3
B
319 330Right-handed alpha
Helix 13
AB4
B
333 340Right-handed alpha
Helix 14
AB5
B
340 352Right-handed alpha
Helix 15
AB6
B
357 365Right-handed alpha
Helix 16
AB7
B
368 385Right-handed alpha
Helix 17
AB8
B
388 402Right-handed alpha
Helix 18
AB9
B
405 416Right-handed alpha
Helix 19
AC1
B
419 421Right-handed 310
Helix 20
AC2
B
422 430Right-handed alpha
Helix 21
AC3
B
435 453Right-handed alpha
Helix 22
AC4
B
459 474Right-handed alpha
Helix 23
AC5
B
475 493Right-handed alpha
Helix 24
AC6
B
495 511Right-handed alpha
Helix 25
AC7
B
515 532Right-handed alpha
Helix 26
AC8
B
534 549Right-handed alpha
Helix 27
AC9
B
553 570Right-handed alpha
Helix 28
AD1
B
572 586Right-handed alpha
Helix 29
AD2
B
591 602Right-handed alpha
Helix 30
AD3
B
609 621Right-handed alpha
Helix 31
AD4
B
625 644Right-handed alpha
Helix 32
AD5
B
644 660Right-handed alpha
Helix 33
AD6
B
666 687Right-handed alpha
Helix 34
AD7
B
689 701Right-handed alpha
Helix 35
AD8
B
753 762Right-handed alpha
Helix 36
AD9
B
814 818Right-handed 310
Helix 37
AE1
B
838 842Right-handed 310
Helix 38
AE2
B
843 852Right-handed alpha
Helix 39
AE3
B
888 894Right-handed alpha
Helix 40
AE4
B
921 930Right-handed alpha
Helix 41
AE5
B
945 960Right-handed alpha
Helix 42
AE6
B
962 977Right-handed alpha
Helix 43
AE7
B
980 985Right-handed alpha
Helix 44
AE8
A
143 154Right-handed alpha
Helix 45
AE9
A
155 166Right-handed alpha
Helix 46
AF1
A
170 182Right-handed alpha
Helix 47
AF2
A
188 205Right-handed alpha
Helix 48
AF3
A
208 230Right-handed alpha
Helix 49
AF4
A
233 248Right-handed alpha
Helix 50
AF5
A
249 264Right-handed alpha
Helix 51
AF6
A
266 281Right-handed alpha
Helix 52
AF7
A
282 304Right-handed alpha
Helix 53
AF8
A
307 312Right-handed alpha
Helix 54
AF9
A
313 315Right-handed 310
Helix 55
AG1
A
318 329Right-handed alpha
Helix 56
AG2
A
333 339Right-handed alpha
Helix 57
AG3
A
340 350Right-handed alpha
Helix 58
AG4
A
357 367Right-handed alpha
Helix 59
AG5
A
368 384Right-handed alpha
Helix 60
AG6
A
388 401Right-handed alpha
Helix 61
AG7
A
404 416Right-handed alpha
Helix 62
AG8
A
419 421Right-handed 310
Helix 63
AG9
A
422 430Right-handed alpha
Helix 64
AH1
A
435 453Right-handed alpha
Helix 65
AH2
A
456 458Right-handed 310
Helix 66
AH3
A
459 474Right-handed alpha
Helix 67
AH4
A
475 493Right-handed alpha
Helix 68
AH5
A
495 511Right-handed alpha
Helix 69
AH6
A
515 532Right-handed alpha
Helix 70
AH7
A
534 549Right-handed alpha
Helix 71
AH8
A
554 570Right-handed alpha
Helix 72
AH9
A
572 585Right-handed alpha
Helix 73
AI1
A
591 602Right-handed alpha
Helix 74
AI2
A
609 621Right-handed alpha
Helix 75
AI3
A
625 641Right-handed alpha
Helix 76
AI4
A
644 660Right-handed alpha
Helix 77
AI5
A
666 688Right-handed alpha
Helix 78
AI6
A
690 702Right-handed alpha
Helix 79
AI7
A
753 761Right-handed alpha
Helix 80
AI8
A
840 842Right-handed 310
Helix 81
AI9
A
843 852Right-handed alpha
Helix 82
AJ1
A
888 894Right-handed alpha
Helix 83
AJ2
A
921 930Right-handed alpha
Helix 84
AJ3
A
945 960Right-handed alpha
Helix 85
AJ4
A
962 977Right-handed alpha
Helix 86
AJ5
A
980 985Right-handed alpha
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There are 6 sheets in PDB entry 8ROT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
731 736first strand
Strand 2
B
720 725anti-parallel
Strand 3
B
710 715anti-parallel
Strand 4
B
766 770parallel
Strand 5
B
787 789parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
833 836first strand
Strand 2
B
804 808parallel
Strand 3
B
856 859parallel
Strand 4
B
901 904parallel
Strand 5
B
933 937parallel
Strand 6
B
987 990anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
862 865first strand
Strand 2
B
872 875anti-parallel
Strand 3
B
885 887anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 736first strand
Strand 2
A
720 725anti-parallel
Strand 3
A
710 715anti-parallel
Strand 4
A
766 770parallel
Strand 5
A
787 789parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 839first strand
Strand 2
A
804 811parallel
Strand 3
A
856 859parallel
Strand 4
A
901 904parallel
Strand 5
A
933 937parallel
Strand 6
A
987 990anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 865first strand
Strand 2
A
872 875anti-parallel
Strand 3
A
885 887anti-parallel
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