Analysis of interatomic Contacts of Structural Units in PDB entry:
8ROZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ROZ entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8ROZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 14
A
 GLY 16TYR 159
A
 HIS 161LEU 298
B
 MET 168VAL 430
C
 SER 335LEU 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8ROZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 56Right-handed alpha
Helix 2
AA2
A
87 94Right-handed alpha
Helix 3
AA3
A
100 121Right-handed alpha
Helix 4
AA4
A
145 149Right-handed 310
Helix 5
AA5
A
165 169Right-handed 310
Helix 6
AA6
A
170 175Right-handed alpha
Helix 7
AA7
A
182 199Right-handed alpha
Helix 8
AA8
A
207 220Right-handed alpha
Helix 9
AA9
A
247 252Right-handed alpha
Helix 10
AB1
A
256 267Right-handed alpha
Helix 11
AB2
A
276 281Right-handed alpha
Helix 12
AB3
A
283 287Right-handed 310
Helix 13
AB4
B
168 173Right-handed 310
Helix 14
AB5
B
176 191Right-handed alpha
Helix 15
AB6
B
196 200Right-handed 310
Helix 16
AB7
B
205 223Right-handed alpha
Helix 17
AB8
B
226 244Right-handed alpha
Helix 18
AB9
B
250 267Right-handed alpha
Helix 19
AC1
B
272 281Right-handed alpha
Helix 20
AC2
B
285 301Right-handed alpha
Helix 21
AC3
B
308 317Right-handed alpha
Helix 22
AC4
B
318 320Right-handed 310
Helix 23
AC5
B
324 341Right-handed alpha
Helix 24
AC6
B
341 346Right-handed alpha
Helix 25
AC7
B
349 366Right-handed alpha
Helix 26
AC8
B
371 379Right-handed alpha
Helix 27
AC9
B
385 398Right-handed alpha
Helix 28
AD1
B
405 411Right-handed alpha
Helix 29
AD2
B
412 417Right-handed 310
Helix 30
AD3
B
418 422Right-handed 310
Helix 31
AD4
C
361 370Right-handed alpha
Helix 32
AD5
C
387 392Right-handed alpha
Helix 33
AD6
C
404 413Right-handed alpha
Helix 34
AD7
C
436 452Right-handed alpha
Helix 35
AD8
C
468 477Right-handed alpha
Helix 36
AD9
C
494 522Right-handed alpha
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There are 4 sheets in PDB entry 8ROZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
75 81anti-parallel
Strand 5
A
66 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
150 151anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
359 360first strand
Strand 2
C
462 466parallel
Strand 3
C
424 430parallel
Strand 4
C
377 384parallel
Strand 5
C
400 401parallel
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