Analysis of interatomic Contacts of Structural Units in PDB entry:
8RPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RPA entry

There is 1 chain in PDB entry 8RPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ASN 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8RPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 33Right-handed alpha
Helix 2
AA2
A
43 46Right-handed 310
Helix 3
AA3
A
47 55Right-handed alpha
Helix 4
AA4
A
65 79Right-handed alpha
Helix 5
AA5
A
93 107Right-handed alpha
Helix 6
AA6
A
140 144Right-handed 310
Helix 7
AA7
A
145 150Right-handed alpha
Helix 8
AA8
A
151 161Right-handed alpha
Helix 9
AA9
A
169 173Right-handed 310
Helix 10
AB1
A
174 188Right-handed alpha
Helix 11
AB2
A
198 205Right-handed alpha
Helix 12
AB3
A
205 213Right-handed alpha
Helix 13
AB4
A
214 216Right-handed 310
Helix 14
AB5
A
223 233Right-handed alpha
Helix 15
AB6
A
239 249Right-handed alpha
Helix 16
AB7
A
296 311Right-handed alpha
Helix 17
AB8
A
314 331Right-handed alpha
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There are 2 sheets in PDB entry 8RPA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 115first strand
Strand 2
A
84 91parallel
Strand 3
A
10 13parallel
Strand 4
A
163 167parallel
Strand 5
A
191 195parallel
Strand 6
A
218 222parallel
Strand 7
A
260 265parallel
Strand 8
A
268 274anti-parallel
Strand 9
A
277 281anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
131 137parallel
Strand 3
A
121 128anti-parallel
Strand 4
A
17 23parallel
Strand 5
A
60 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il