Analysis of interatomic Contacts of Structural Units in PDB entry:
8RPI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RPI entry

There are 6 chains in PDB entry 8RPI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	LEU 610
B	ASP 3	LEU 610
C	ASP 3	LEU 610
D	ASP 3	LEU 610
E	ASP 3	LEU 610
F	ASP 3	THR 609

There are202 helices in PDB entry 8RPI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	19	Right-handed alpha
Helix 2	AA2	A	32	43	Right-handed alpha
Helix 3	AA3	A	52	68	Right-handed alpha
Helix 4	AA4	A	78	83	Right-handed alpha
Helix 5	AA5	A	84	95	Right-handed alpha
Helix 6	AA6	A	125	130	Right-handed alpha
Helix 7	AA7	A	142	144	Right-handed 310
Helix 8	AA8	A	145	159	Right-handed alpha
Helix 9	AA9	A	171	176	Right-handed alpha
Helix 10	AB1	A	179	183	Right-handed 310
Helix 11	AB2	A	196	213	Right-handed alpha
Helix 12	AB3	A	222	227	Right-handed alpha
Helix 13	AB4	A	229	231	Right-handed 310
Helix 14	AB5	A	232	241	Right-handed alpha
Helix 15	AB6	A	250	254	Right-handed 310
Helix 16	AB7	A	270	279	Right-handed alpha
Helix 17	AB8	A	291	296	Right-handed alpha
Helix 18	AB9	A	298	302	Right-handed 310
Helix 19	AC1	A	314	319	Right-handed alpha
Helix 20	AC2	A	332	345	Right-handed alpha
Helix 21	AC3	A	355	369	Right-handed alpha
Helix 22	AC4	A	373	377	Right-handed 310
Helix 23	AC5	A	384	394	Right-handed alpha
Helix 24	AC6	A	407	417	Right-handed alpha
Helix 25	AC7	A	436	448	Right-handed alpha
Helix 26	AC8	A	460	465	Right-handed alpha
Helix 27	AC9	A	467	475	Right-handed alpha
Helix 28	AD1	A	489	501	Right-handed alpha
Helix 29	AD2	A	508	512	Right-handed 310
Helix 30	AD3	A	517	525	Right-handed alpha
Helix 31	AD4	A	537	548	Right-handed alpha
Helix 32	AD5	A	591	599	Right-handed alpha
Helix 33	AD6	A	604	609	Right-handed alpha
Helix 34	AD7	B	8	19	Right-handed alpha
Helix 35	AD8	B	29	31	Right-handed 310
Helix 36	AD9	B	32	43	Right-handed alpha
Helix 37	AE1	B	52	68	Right-handed alpha
Helix 38	AE2	B	78	83	Right-handed alpha
Helix 39	AE3	B	84	94	Right-handed alpha
Helix 40	AE4	B	125	130	Right-handed alpha
Helix 41	AE5	B	142	144	Right-handed 310
Helix 42	AE6	B	145	159	Right-handed alpha
Helix 43	AE7	B	171	176	Right-handed alpha
Helix 44	AE8	B	179	183	Right-handed 310
Helix 45	AE9	B	196	213	Right-handed alpha
Helix 46	AF1	B	221	228	Right-handed alpha
Helix 47	AF2	B	229	231	Right-handed 310
Helix 48	AF3	B	232	241	Right-handed alpha
Helix 49	AF4	B	248	254	Right-handed 310
Helix 50	AF5	B	270	279	Right-handed alpha
Helix 51	AF6	B	291	296	Right-handed alpha
Helix 52	AF7	B	298	302	Right-handed 310
Helix 53	AF8	B	314	319	Right-handed alpha
Helix 54	AF9	B	332	346	Right-handed alpha
Helix 55	AG1	B	355	369	Right-handed alpha
Helix 56	AG2	B	373	377	Right-handed 310
Helix 57	AG3	B	384	394	Right-handed alpha
Helix 58	AG4	B	406	417	Right-handed alpha
Helix 59	AG5	B	436	448	Right-handed alpha
Helix 60	AG6	B	460	464	Right-handed 310
Helix 61	AG7	B	465	466	Right-handed 310
Helix 62	AG8	B	467	475	Right-handed alpha
Helix 63	AG9	B	489	501	Right-handed alpha
Helix 64	AH1	B	508	512	Right-handed 310
Helix 65	AH2	B	517	525	Right-handed alpha
Helix 66	AH3	B	534	536	Right-handed 310
Helix 67	AH4	B	537	548	Right-handed alpha
Helix 68	AH5	B	591	599	Right-handed alpha
Helix 69	AH6	B	604	609	Right-handed alpha
Helix 70	AH7	C	8	19	Right-handed alpha
Helix 71	AH8	C	32	43	Right-handed alpha
Helix 72	AH9	C	52	68	Right-handed alpha
Helix 73	AI1	C	78	83	Right-handed alpha
Helix 74	AI2	C	84	95	Right-handed alpha
Helix 75	AI3	C	125	130	Right-handed alpha
Helix 76	AI4	C	142	144	Right-handed 310
Helix 77	AI5	C	145	159	Right-handed alpha
Helix 78	AI6	C	171	176	Right-handed alpha
Helix 79	AI7	C	179	183	Right-handed 310
Helix 80	AI8	C	196	213	Right-handed alpha
Helix 81	AI9	C	222	228	Right-handed alpha
Helix 82	AJ1	C	229	231	Right-handed 310
Helix 83	AJ2	C	232	241	Right-handed alpha
Helix 84	AJ3	C	250	254	Right-handed 310
Helix 85	AJ4	C	270	279	Right-handed alpha
Helix 86	AJ5	C	291	296	Right-handed alpha
Helix 87	AJ6	C	298	302	Right-handed 310
Helix 88	AJ7	C	314	320	Right-handed alpha
Helix 89	AJ8	C	332	345	Right-handed alpha
Helix 90	AJ9	C	355	369	Right-handed alpha
Helix 91	AK1	C	373	377	Right-handed 310
Helix 92	AK2	C	384	394	Right-handed alpha
Helix 93	AK3	C	406	415	Right-handed alpha
Helix 94	AK4	C	436	448	Right-handed alpha
Helix 95	AK5	C	460	465	Right-handed alpha
Helix 96	AK6	C	467	475	Right-handed alpha
Helix 97	AK7	C	489	501	Right-handed alpha
Helix 98	AK8	C	508	512	Right-handed 310
Helix 99	AK9	C	517	525	Right-handed alpha
Helix 100	AL1	C	537	548	Right-handed alpha
Helix 101	AL2	C	591	599	Right-handed alpha
Helix 102	AL3	C	604	610	Right-handed 310
Helix 103	AL4	D	8	19	Right-handed alpha
Helix 104	AL5	D	32	43	Right-handed alpha
Helix 105	AL6	D	52	68	Right-handed alpha
Helix 106	AL7	D	78	83	Right-handed alpha
Helix 107	AL8	D	84	95	Right-handed alpha
Helix 108	AL9	D	125	130	Right-handed alpha
Helix 109	AM1	D	142	144	Right-handed 310
Helix 110	AM2	D	145	159	Right-handed alpha
Helix 111	AM3	D	171	175	Right-handed alpha
Helix 112	AM4	D	179	183	Right-handed 310
Helix 113	AM5	D	196	213	Right-handed alpha
Helix 114	AM6	D	222	227	Right-handed alpha
Helix 115	AM7	D	229	231	Right-handed 310
Helix 116	AM8	D	232	241	Right-handed alpha
Helix 117	AM9	D	248	254	Right-handed 310
Helix 118	AN1	D	270	279	Right-handed alpha
Helix 119	AN2	D	291	296	Right-handed alpha
Helix 120	AN3	D	298	302	Right-handed 310
Helix 121	AN4	D	314	319	Right-handed alpha
Helix 122	AN5	D	332	345	Right-handed alpha
Helix 123	AN6	D	355	369	Right-handed alpha
Helix 124	AN7	D	373	377	Right-handed 310
Helix 125	AN8	D	384	394	Right-handed alpha
Helix 126	AN9	D	406	417	Right-handed alpha
Helix 127	AO1	D	436	448	Right-handed alpha
Helix 128	AO2	D	460	465	Right-handed alpha
Helix 129	AO3	D	467	475	Right-handed alpha
Helix 130	AO4	D	489	501	Right-handed alpha
Helix 131	AO5	D	517	525	Right-handed alpha
Helix 132	AO6	D	534	536	Right-handed 310
Helix 133	AO7	D	537	548	Right-handed alpha
Helix 134	AO8	D	591	599	Right-handed alpha
Helix 135	AO9	D	604	609	Right-handed alpha
Helix 136	AP1	E	8	19	Right-handed alpha
Helix 137	AP2	E	32	43	Right-handed alpha
Helix 138	AP3	E	52	68	Right-handed alpha
Helix 139	AP4	E	78	83	Right-handed alpha
Helix 140	AP5	E	84	95	Right-handed alpha
Helix 141	AP6	E	125	130	Right-handed alpha
Helix 142	AP7	E	142	144	Right-handed 310
Helix 143	AP8	E	145	159	Right-handed alpha
Helix 144	AP9	E	171	175	Right-handed alpha
Helix 145	AQ1	E	179	183	Right-handed 310
Helix 146	AQ2	E	196	213	Right-handed alpha
Helix 147	AQ3	E	222	228	Right-handed alpha
Helix 148	AQ4	E	229	231	Right-handed 310
Helix 149	AQ5	E	232	241	Right-handed alpha
Helix 150	AQ6	E	248	254	Right-handed 310
Helix 151	AQ7	E	270	279	Right-handed alpha
Helix 152	AQ8	E	291	296	Right-handed alpha
Helix 153	AQ9	E	298	302	Right-handed 310
Helix 154	AR1	E	314	320	Right-handed alpha
Helix 155	AR2	E	332	346	Right-handed alpha
Helix 156	AR3	E	355	369	Right-handed alpha
Helix 157	AR4	E	373	377	Right-handed 310
Helix 158	AR5	E	378	382	Right-handed 310
Helix 159	AR6	E	384	394	Right-handed alpha
Helix 160	AR7	E	406	417	Right-handed alpha
Helix 161	AR8	E	436	448	Right-handed alpha
Helix 162	AR9	E	460	465	Right-handed alpha
Helix 163	AS1	E	467	476	Right-handed alpha
Helix 164	AS2	E	489	501	Right-handed alpha
Helix 165	AS3	E	517	525	Right-handed alpha
Helix 166	AS4	E	537	548	Right-handed alpha
Helix 167	AS5	E	591	599	Right-handed alpha
Helix 168	AS6	E	604	610	Right-handed 310
Helix 169	AS7	F	8	19	Right-handed alpha
Helix 170	AS8	F	32	43	Right-handed alpha
Helix 171	AS9	F	52	68	Right-handed alpha
Helix 172	AT1	F	78	83	Right-handed alpha
Helix 173	AT2	F	84	95	Right-handed alpha
Helix 174	AT3	F	125	130	Right-handed alpha
Helix 175	AT4	F	142	144	Right-handed 310
Helix 176	AT5	F	145	159	Right-handed alpha
Helix 177	AT6	F	171	175	Right-handed alpha
Helix 178	AT7	F	179	183	Right-handed 310
Helix 179	AT8	F	196	213	Right-handed alpha
Helix 180	AT9	F	222	228	Right-handed alpha
Helix 181	AU1	F	229	231	Right-handed 310
Helix 182	AU2	F	232	241	Right-handed alpha
Helix 183	AU3	F	250	254	Right-handed 310
Helix 184	AU4	F	270	279	Right-handed alpha
Helix 185	AU5	F	291	296	Right-handed alpha
Helix 186	AU6	F	298	302	Right-handed 310
Helix 187	AU7	F	314	320	Right-handed alpha
Helix 188	AU8	F	332	345	Right-handed alpha
Helix 189	AU9	F	355	369	Right-handed alpha
Helix 190	AV1	F	373	377	Right-handed 310
Helix 191	AV2	F	384	394	Right-handed alpha
Helix 192	AV3	F	406	415	Right-handed alpha
Helix 193	AV4	F	436	448	Right-handed alpha
Helix 194	AV5	F	460	465	Right-handed alpha
Helix 195	AV6	F	467	475	Right-handed alpha
Helix 196	AV7	F	489	501	Right-handed alpha
Helix 197	AV8	F	508	512	Right-handed 310
Helix 198	AV9	F	517	525	Right-handed alpha
Helix 199	AW1	F	534	536	Right-handed 310
Helix 200	AW2	F	537	548	Right-handed alpha
Helix 201	AW3	F	591	599	Right-handed alpha
Helix 202	AW4	F	604	609	Right-handed 310

There are 26 sheets in PDB entry 8RPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	177	178	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	23	26	parallel
Strand 3	A	72	75	parallel
Strand 4	A	98	104	parallel
Strand 5	A	164	170	parallel
Strand 6	A	136	139	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	216	220	parallel
Strand 3	A	282	286	parallel
Strand 4	A	307	312	parallel
Strand 5	A	328	330	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	426	first strand
Strand 2	A	401	404	parallel
Strand 3	A	453	458	parallel
Strand 4	A	479	485	parallel
Strand 5	A	552	557	parallel
Strand 6	A	529	532	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	177	178	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	23	26	parallel
Strand 3	B	72	75	parallel
Strand 4	B	98	104	parallel
Strand 5	B	164	170	parallel
Strand 6	B	136	139	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	246	first strand
Strand 2	B	216	220	parallel
Strand 3	B	282	286	parallel
Strand 4	B	307	312	parallel
Strand 5	B	328	330	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	426	first strand
Strand 2	B	401	404	parallel
Strand 3	B	453	458	parallel
Strand 4	B	479	485	parallel
Strand 5	B	552	557	parallel
Strand 6	B	529	532	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	572	first strand
Strand 2	B	578	579	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	177	178	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	23	26	parallel
Strand 3	C	72	75	parallel
Strand 4	C	98	104	parallel
Strand 5	C	164	170	parallel
Strand 6	C	136	139	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	246	first strand
Strand 2	C	216	220	parallel
Strand 3	C	282	286	parallel
Strand 4	C	307	311	parallel
Strand 5	C	328	329	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	424	426	first strand
Strand 2	C	401	404	parallel
Strand 3	C	453	458	parallel
Strand 4	C	479	485	parallel
Strand 5	C	552	557	parallel
Strand 6	C	529	532	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	177	178	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	23	26	parallel
Strand 3	D	72	75	parallel
Strand 4	D	98	104	parallel
Strand 5	D	164	170	parallel
Strand 6	D	136	139	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	246	first strand
Strand 2	D	216	220	parallel
Strand 3	D	282	286	parallel
Strand 4	D	307	312	parallel
Strand 5	D	328	330	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	426	first strand
Strand 2	D	401	404	parallel
Strand 3	D	453	458	parallel
Strand 4	D	479	485	parallel
Strand 5	D	552	557	parallel
Strand 6	D	529	532	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	571	572	first strand
Strand 2	D	578	579	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	177	178	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	49	first strand
Strand 2	E	23	26	parallel
Strand 3	E	72	75	parallel
Strand 4	E	98	104	parallel
Strand 5	E	164	170	parallel
Strand 6	E	136	139	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	246	first strand
Strand 2	E	216	220	parallel
Strand 3	E	282	286	parallel
Strand 4	E	307	312	parallel
Strand 5	E	328	330	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	424	426	first strand
Strand 2	E	401	404	parallel
Strand 3	E	453	458	parallel
Strand 4	E	479	485	parallel
Strand 5	E	552	557	parallel
Strand 6	E	529	532	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	177	178	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	49	first strand
Strand 2	F	23	26	parallel
Strand 3	F	72	75	parallel
Strand 4	F	98	104	parallel
Strand 5	F	164	170	parallel
Strand 6	F	136	139	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	246	first strand
Strand 2	F	216	220	parallel
Strand 3	F	282	286	parallel
Strand 4	F	307	311	parallel
Strand 5	F	328	329	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	424	426	first strand
Strand 2	F	401	404	parallel
Strand 3	F	453	458	parallel
Strand 4	F	479	485	parallel
Strand 5	F	552	557	parallel
Strand 6	F	529	532	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RPI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RPI