Analysis of interatomic Contacts of Structural Units in PDB entry:
8RPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RPL entry

There are 2 chains in PDB entry 8RPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 14	GLU 475
A	GLY 477	PRO 638

There are103 helices in PDB entry 8RPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	18	Right-handed 310
Helix 2	AA2	A	25	30	Right-handed alpha
Helix 3	AA3	A	30	39	Right-handed alpha
Helix 4	AA4	A	43	54	Right-handed alpha
Helix 5	AA5	A	54	64	Right-handed alpha
Helix 6	AA6	A	93	99	Right-handed alpha
Helix 7	AA7	A	100	103	Right-handed 310
Helix 8	AA8	A	105	109	Right-handed 310
Helix 9	AA9	A	127	145	Right-handed alpha
Helix 10	AB1	A	159	173	Right-handed alpha
Helix 11	AB2	A	184	196	Right-handed alpha
Helix 12	AB3	A	214	224	Right-handed alpha
Helix 13	AB4	A	252	257	Right-handed alpha
Helix 14	AB5	A	295	310	Right-handed alpha
Helix 15	AB6	A	326	333	Right-handed alpha
Helix 16	AB7	A	334	340	Right-handed alpha
Helix 17	AB8	A	357	367	Right-handed alpha
Helix 18	AB9	A	374	383	Right-handed alpha
Helix 19	AC1	A	386	391	Right-handed alpha
Helix 20	AC2	A	408	419	Right-handed alpha
Helix 21	AC3	A	432	436	Right-handed 310
Helix 22	AC4	A	496	506	Right-handed alpha
Helix 23	AC5	A	544	553	Right-handed alpha
Helix 24	AC6	A	587	602	Right-handed alpha
Helix 25	AC7	A	603	607	Right-handed 310
Helix 26	AC8	A	626	636	Right-handed alpha
Helix 27	AC9	B	14	16	Right-handed 310
Helix 28	AD1	B	23	29	Right-handed alpha
Helix 29	AD2	B	30	38	Right-handed alpha
Helix 30	AD3	B	43	54	Right-handed alpha
Helix 31	AD4	B	54	64	Right-handed alpha
Helix 32	AD5	B	93	99	Right-handed alpha
Helix 33	AD6	B	100	103	Right-handed 310
Helix 34	AD7	B	105	109	Right-handed 310
Helix 35	AD8	B	127	144	Right-handed alpha
Helix 36	AD9	B	159	173	Right-handed alpha
Helix 37	AE1	B	184	195	Right-handed alpha
Helix 38	AE2	B	214	224	Right-handed alpha
Helix 39	AE3	B	252	257	Right-handed alpha
Helix 40	AE4	B	295	310	Right-handed alpha
Helix 41	AE5	B	326	333	Right-handed alpha
Helix 42	AE6	B	334	340	Right-handed alpha
Helix 43	AE7	B	357	367	Right-handed alpha
Helix 44	AE8	B	374	383	Right-handed alpha
Helix 45	AE9	B	386	391	Right-handed alpha
Helix 46	AF1	B	408	420	Right-handed alpha
Helix 47	AF2	B	432	436	Right-handed 310
Helix 48	AF3	B	496	503	Right-handed alpha
Helix 49	AF4	B	544	553	Right-handed alpha
Helix 50	AF5	B	587	602	Right-handed alpha
Helix 51	AF6	B	603	607	Right-handed 310
Helix 52	AF7	B	626	636	Right-handed alpha
Helix 53	AF8	C	14	16	Right-handed 310
Helix 54	AF9	C	23	30	Right-handed alpha
Helix 55	AG1	C	30	39	Right-handed alpha
Helix 56	AG2	C	43	54	Right-handed alpha
Helix 57	AG3	C	54	64	Right-handed alpha
Helix 58	AG4	C	93	99	Right-handed alpha
Helix 59	AG5	C	100	103	Right-handed 310
Helix 60	AG6	C	105	109	Right-handed 310
Helix 61	AG7	C	127	144	Right-handed alpha
Helix 62	AG8	C	159	173	Right-handed alpha
Helix 63	AG9	C	184	195	Right-handed alpha
Helix 64	AH1	C	214	224	Right-handed alpha
Helix 65	AH2	C	252	257	Right-handed alpha
Helix 66	AH3	C	295	310	Right-handed alpha
Helix 67	AH4	C	326	333	Right-handed alpha
Helix 68	AH5	C	334	339	Right-handed alpha
Helix 69	AH6	C	357	367	Right-handed alpha
Helix 70	AH7	C	374	383	Right-handed alpha
Helix 71	AH8	C	386	391	Right-handed alpha
Helix 72	AH9	C	408	419	Right-handed alpha
Helix 73	AI1	C	432	436	Right-handed 310
Helix 74	AI2	C	496	506	Right-handed alpha
Helix 75	AI3	C	544	553	Right-handed alpha
Helix 76	AI4	C	587	602	Right-handed alpha
Helix 77	AI5	C	603	607	Right-handed 310
Helix 78	AI6	C	626	636	Right-handed alpha
Helix 79	AI7	D	23	29	Right-handed alpha
Helix 80	AI8	D	30	37	Right-handed alpha
Helix 81	AI9	D	43	54	Right-handed alpha
Helix 82	AJ1	D	54	65	Right-handed alpha
Helix 83	AJ2	D	93	99	Right-handed alpha
Helix 84	AJ3	D	100	103	Right-handed 310
Helix 85	AJ4	D	105	109	Right-handed 310
Helix 86	AJ5	D	127	144	Right-handed alpha
Helix 87	AJ6	D	159	173	Right-handed alpha
Helix 88	AJ7	D	184	195	Right-handed alpha
Helix 89	AJ8	D	214	224	Right-handed alpha
Helix 90	AJ9	D	252	257	Right-handed alpha
Helix 91	AK1	D	295	310	Right-handed alpha
Helix 92	AK2	D	326	334	Right-handed alpha
Helix 93	AK3	D	334	339	Right-handed alpha
Helix 94	AK4	D	357	367	Right-handed alpha
Helix 95	AK5	D	374	383	Right-handed alpha
Helix 96	AK6	D	386	391	Right-handed alpha
Helix 97	AK7	D	408	419	Right-handed alpha
Helix 98	AK8	D	432	436	Right-handed 310
Helix 99	AK9	D	496	502	Right-handed alpha
Helix 100	AL1	D	544	553	Right-handed alpha
Helix 101	AL2	D	587	602	Right-handed alpha
Helix 102	AL3	D	603	607	Right-handed 310
Helix 103	AL4	D	626	636	Right-handed alpha

There are 35 sheets in PDB entry 8RPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	84	86	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	270	271	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	343	347	parallel
Strand 4	A	317	320	parallel
Strand 5	A	370	373	parallel
Strand 6	A	399	403	parallel
Strand 7	A	426	429	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	231	235	parallel
Strand 3	A	199	203	parallel
Strand 4	A	152	155	parallel
Strand 5	A	176	178	parallel
Strand 6	A	275	281	parallel
Strand 7	A	289	294	anti-parallel
Strand 8	A	492	493	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	211	213	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	465	first strand
Strand 2	A	478	482	anti-parallel
Strand 3	A	511	519	anti-parallel
Strand 4	A	525	530	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	A	540	543	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	567	first strand
Strand 2	A	571	580	anti-parallel
Strand 3	A	610	614	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	C	637	638	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	84	86	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	270	271	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	343	347	parallel
Strand 4	B	317	320	parallel
Strand 5	B	370	373	parallel
Strand 6	B	399	403	parallel
Strand 7	B	426	429	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	231	235	parallel
Strand 3	B	199	203	parallel
Strand 4	B	152	155	parallel
Strand 5	B	176	178	parallel
Strand 6	B	275	281	parallel
Strand 7	B	289	294	anti-parallel
Strand 8	B	492	493	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	211	213	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	465	first strand
Strand 2	B	478	482	anti-parallel
Strand 3	B	511	519	anti-parallel
Strand 4	B	525	530	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	537	first strand
Strand 2	B	540	543	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	567	first strand
Strand 2	B	571	580	anti-parallel
Strand 3	B	610	613	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	638	first strand
Strand 2	D	18	19	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	D	637	638	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	84	86	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	270	271	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	343	347	parallel
Strand 4	C	317	320	parallel
Strand 5	C	370	373	parallel
Strand 6	C	399	403	parallel
Strand 7	C	426	429	parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	231	235	parallel
Strand 3	C	199	203	parallel
Strand 4	C	152	155	parallel
Strand 5	C	176	178	parallel
Strand 6	C	275	281	parallel
Strand 7	C	289	294	anti-parallel
Strand 8	C	492	493	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	211	213	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	465	first strand
Strand 2	C	478	482	anti-parallel
Strand 3	C	511	519	anti-parallel
Strand 4	C	525	530	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	537	first strand
Strand 2	C	540	543	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	567	first strand
Strand 2	C	571	580	anti-parallel
Strand 3	C	610	614	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	83	86	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	270	271	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	126	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	343	347	parallel
Strand 4	D	317	320	parallel
Strand 5	D	370	373	parallel
Strand 6	D	399	403	parallel
Strand 7	D	426	429	parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	251	first strand
Strand 2	D	231	235	parallel
Strand 3	D	199	203	parallel
Strand 4	D	152	155	parallel
Strand 5	D	176	178	parallel
Strand 6	D	275	281	parallel
Strand 7	D	289	294	anti-parallel
Strand 8	D	492	493	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	211	213	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	465	first strand
Strand 2	D	478	482	anti-parallel
Strand 3	D	511	519	anti-parallel
Strand 4	D	525	530	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	534	537	first strand
Strand 2	D	540	543	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	557	567	first strand
Strand 2	D	571	580	anti-parallel
Strand 3	D	610	613	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RPL