Analysis of interatomic Contacts of Structural Units in PDB entry:
8RPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RPP entry

There are 4 chains in PDB entry 8RPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 606GLY 665
B
 GLY 603GLY 665
C
 GLY 603PRO 664
D
 GLU 490VAL 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8RPP

There are 4 sheets in PDB entry 8RPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 656first strand
Strand 2
A
641 646anti-parallel
Strand 3
A
630 636anti-parallel
Strand 4
A
609 611anti-parallel
Strand 5
A
660 662anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
652 656first strand
Strand 2
B
641 646anti-parallel
Strand 3
B
630 636anti-parallel
Strand 4
B
609 611anti-parallel
Strand 5
B
660 662anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
652 656first strand
Strand 2
C
641 646anti-parallel
Strand 3
C
630 636anti-parallel
Strand 4
C
609 611anti-parallel
Strand 5
C
660 662anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
536 540first strand
Strand 2
D
525 530anti-parallel
Strand 3
D
514 520anti-parallel
Strand 4
D
493 495anti-parallel
Strand 5
D
544 546anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il